Packages tagged bioinformatics
128 packages have this tag.
[Merge tag] (trustees only)Related tags: library (108), program (70), gpl (68), bsd3 (23), mit (9), formal-languages (8), data-structures (6), algorithms (5), ab1 (1), abif (1), bindings (1), chromatogram (1), ...
Name |
DLs |
Rating |
Rev Deps |
Description |
Tags |
Last U/L |
Last Version |
Maintainers |
|---|---|---|---|---|---|---|---|---|
| ADPfusion | 52 | 0.0 | 15 | Efficient, high-level dynamic programming. | (algorithms, bioinformatics, bsd3, data-structures, formal-languages, library) | 2019-10-01 | 0.6.0.0 | ChristianHoener |
| ADPfusionForest | 4 | 0.0 | 1 | Dynamic programming on tree and forest structures | (bioinformatics, bsd3, formal-languages, library) | 2017-11-23 | 0.0.0.1 | ChristianHoener |
| ADPfusionSet | 7 | 0.0 | 3 | Dynamic programming for Set data structures. | (algorithms, bioinformatics, bsd3, data-structures, formal-languages, library) | 2017-10-19 | 0.0.0.2 | ChristianHoener |
| AlignmentAlgorithms | 23 | 0.0 | 1 | Collection of alignment algorithms | (algorithms, bioinformatics, data-structures, gpl, library, linguistics) | 2017-03-14 | 0.1.0.0 | ChristianHoener |
| BCMtools | 8 | 0.0 | 0 | Big Contact Map Tools | (bioinformatics, library, mit, program) | 2015-05-05 | 0.1.1 | kaizhang |
| BioHMM | 46 | 0.0 | 1 | Libary for Hidden Markov Models in HMMER3 format. | (bioinformatics, gpl, library) | 2017-06-09 | 1.2.0 | FlorianEggenhofer |
| Biobase | 28 | 0.0 | 6 | Base library for bioinformatics | (bioinformatics, gpl, library) | 2011-04-08 | 0.3.1.1 | ChristianHoener |
| BiobaseBlast | 17 | 0.0 | 4 | BLAST-related tools | (bioinformatics, gpl, library) | 2021-06-05 | 0.3.3.0 | ChristianHoener, FlorianEggenhofer |
| BiobaseDotP | 5 | 0.0 | 2 | Vienna / DotBracket / ExtSS parsers | (bioinformatics, gpl, library) | 2011-08-22 | 0.1.0.0 | ChristianHoener |
| BiobaseEnsembl | 19 | 0.0 | 1 | Ensembl related datastructures and functions | (bioinformatics, gpl, library) | 2020-01-09 | 0.2.0.1 | FlorianEggenhofer |
| BiobaseFR3D | 16 | 0.0 | 2 | Importer for FR3D resources | (bioinformatics, gpl, library) | 2012-02-16 | 0.2.3.0 | ChristianHoener |
| BiobaseFasta | 43 | 0.0 | 4 | streaming FASTA parser | (bioinformatics, bsd3, library, program) | 2021-06-04 | 0.4.0.1 | ChristianHoener |
| BiobaseHTTP | 10 | 0.0 | 1 | Libary to interface with the Bioinformatics HTTP services - Entrez Ensembl | (bioinformatics, gpl, library) | 2019-11-20 | 1.2.0 | FlorianEggenhofer |
| BiobaseHTTPTools | 8 | 0.0 | 0 | Tools to query Bioinformatics HTTP services e.g. Entrez, Ensembl. | (bioinformatics, gpl, program) | 2018-12-13 | 1.0.0 | FlorianEggenhofer |
| BiobaseInfernal | 39 | 0.0 | 3 | Infernal data structures and tools | (bioinformatics, gpl, library, program) | 2017-03-14 | 0.8.1.0 | ChristianHoener |
| BiobaseMAF | 6 | 0.0 | 1 | Multiple Alignment Format | (bioinformatics, gpl, library) | 2011-07-29 | 0.5.0.0 | ChristianHoener |
| BiobaseNewick | 13 | 0.0 | 2 | Newick file format parser. | (bioinformatics, bsd3, library, program) | 2017-07-07 | 0.0.0.2 | ChristianHoener |
| BiobaseTrainingData | 13 | 0.0 | 2 | RNA folding training data | (bioinformatics, gpl, library, program) | 2011-09-29 | 0.1.2.3 | ChristianHoener |
| BiobaseTurner | 55 | 0.0 | 4 | Import Turner RNA parameters | (bioinformatics, gpl, library) | 2013-04-25 | 0.3.1.1 | ChristianHoener |
| BiobaseTypes | 34 | 0.0 | 12 | Collection of types for bioinformatics | (bioinformatics, bsd3, data-structures, library) | 2021-06-04 | 0.2.1.0 | ChristianHoener |
| BiobaseVienna | 47 | 0.0 | 3 | Import Vienna energy parameters | (bioinformatics, gpl, library) | 2013-04-22 | 0.3.0.0 | ChristianHoener |
| BiobaseXNA | 107 | 0.0 | 17 | Efficient RNA/DNA/Protein Primary/Secondary Structure | (bioinformatics, bsd3, library, program) | 2021-06-04 | 0.11.1.1 | ChristianHoener |
| BlastHTTP | 25 | 0.0 | 2 | Libary to interface with the NCBI blast REST interface | (bioinformatics, gpl, library) | 2021-06-05 | 1.4.2 | FlorianEggenhofer |
| CMCompare | 11 | 0.0 | 1 | Infernal covariance model comparison | (bioinformatics, gpl, library, program) | 2012-11-22 | 0.0.1.5 | ChristianHoener |
| ClustalParser | 59 | 0.0 | 3 | Libary for parsing Clustal tools output | (bioinformatics, gpl, library, program) | 2019-11-14 | 1.3.0 | FlorianEggenhofer |
| DnaProteinAlignment | 6 | 0.0 | 1 | Frameshift-aware alignment of protein sequences with DNA sequences | (bioinformatics, gpl, library, program) | 2013-12-18 | 0.0.0.1 | ChristianHoener |
| EntrezHTTP (deprecated in favor of BiobaseHTTP) | 21 | 0.0 | 1 | Libary to interface with the NCBI Entrez REST service. | (bioinformatics, deprecated, gpl, library) | 2017-08-10 | 1.0.4 | FlorianEggenhofer |
| ForestStructures | 36 | 0.0 | 5 | Tree- and forest structures | (bioinformatics, bsd3, formal-languages, library) | 2023-06-14 | 0.0.1.1 | ChristianHoener |
| Forestry | 5 | 0.0 | 1 | Comparison of trees and forests. | (bioinformatics, bsd3, formal-languages, library) | 2017-11-23 | 0.0.0.1 | ChristianHoener |
| FormalGrammars | 28 | 0.0 | 9 | (Context-free) grammars in formal language theory | (bioinformatics, formal-languages, gpl, library) | 2019-10-02 | 0.4.0.0 | ChristianHoener |
| Genbank | 12 | 0.0 | 1 | Libary for processing the NCBI genbank format | (bioinformatics, library, program) | 2014-10-26 | 1.0.3 | FlorianEggenhofer |
| Gene-CluEDO | 6 | 0.0 | 0 | Hox gene clustering | (bioinformatics, gpl, library, program) | 2017-09-11 | 0.0.0.2 | ChristianHoener |
| GenussFold | 10 | 0.0 | 0 | MCFGs for Genus-1 RNA Pseudoknots | (bioinformatics, formal-languages, gpl, library, program) | 2015-07-16 | 0.0.0.2 | ChristianHoener |
| GrammarProducts | 31 | 0.0 | 4 | Grammar products and higher-dimensional grammars | (bioinformatics, formal-languages, gpl, library) | 2019-10-02 | 0.2.0.0 | ChristianHoener |
| MC-Fold-DP | 12 | 0.0 | 1 | Folding algorithm based on nucleotide cyclic motifs. | (bioinformatics, gpl, library, program) | 2012-11-12 | 0.1.1.0 | ChristianHoener |
| MutationOrder | 12 | 0.0 | 0 | Most likely order of mutation events in RNA | (bioinformatics, gpl, library, program) | 2017-10-24 | 0.0.1.0 | ChristianHoener |
| Nussinov78 | 19 | 0.0 | 1 | Nussinov78 using the ADPfusion library. | (bioinformatics, gpl, library, program) | 2012-11-07 | 0.1.0.0 | ChristianHoener |
| PDBtools | 14 | 0.0 | 1 | A library for analysis of 3-D protein coordinates | (bioinformatics, gpl, library) | 2012-06-03 | 0.0.3 | GrantRotskoff |
| RNAFold | 29 | 0.0 | 2 | RNA secondary structure prediction | (bioinformatics, gpl, library, program) | 2013-12-06 | 1.99.3.4 | ChristianHoener |
| RNAFoldProgs | 9 | 0.0 | 1 | RNA secondary structure folding | (bioinformatics, gpl, program) | 2010-09-23 | 0.0.0.3 | ChristianHoener |
| RNAdesign | 28 | 0.0 | 1 | Multi-target RNA sequence design | (bioinformatics, gpl, library, program) | 2014-02-13 | 0.1.2.2 | ChristianHoener |
| RNAdraw | 9 | 0.0 | 1 | Draw RNA secondary structures | (bioinformatics, gpl, library, program) | 2014-02-03 | 0.2.0.1 | ChristianHoener |
| RNAlien | 69 | 2.0 | 0 | Unsupervized construction of RNA family models | (bioinformatics, gpl, library, program) | 2019-08-29 | 1.7.0 | FlorianEggenhofer |
| RNAwolf | 21 | 0.0 | 1 | RNA folding with non-canonical basepairs and base-triplets. | (bioinformatics, gpl, library, program) | 2011-09-29 | 0.4.0.0 | ChristianHoener |
| SelectSequencesFromMSA | 10 | 0.0 | 0 | Selects a representative subset of sequences from multiple sequence alignment. | (bioinformatics, gpl, library, program) | 2018-03-12 | 1.0.5 | FlorianEggenhofer |
| StockholmAlignment | 25 | 2.0 | 2 | Libary for Stockholm aligmnent format | (bioinformatics, gpl, library) | 2019-12-17 | 1.3.0 | FlorianEggenhofer |
| Taxonomy | 26 | 0.0 | 3 | Libary for parsing, processing and vizualization of taxonomy data | (bioinformatics, gpl, library) | 2021-05-30 | 2.2.0 | FlorianEggenhofer |
| TaxonomyTools | 7 | 0.0 | 1 | Tool for parsing, processing, comparing and visualizing taxonomy data | (bioinformatics, gpl, program) | 2017-01-26 | 1.0.1 | FlorianEggenhofer |
| ViennaRNA-bindings | 36 | 0.0 | 4 | ViennaRNA v2 bindings | (bindings, bioinformatics, ffi, library) | 2017-11-23 | 0.233.2.0 | ChristianHoener |
| ViennaRNA-extras | 4 | 0.0 | 1 | ViennaRNA v2 extensions | (bioinformatics, bsd3, library) | 2017-11-23 | 0.0.0.1 | ChristianHoener |
| ViennaRNAParser | 83 | 0.0 | 3 | Libary for parsing ViennaRNA package output | (bioinformatics, gpl, library) | 2017-10-18 | 1.3.3 | FlorianEggenhofer |
| a50 | 14 | 0.0 | 1 | Compare genome assemblies | (bioinformatics, program) | 2013-07-23 | 0.5 | KetilMalde |
| adp-multi | 15 | 0.0 | 2 | ADP for multiple context-free languages | (algorithms, bioinformatics, bsd3, data-structures, library) | 2013-05-29 | 0.2.3 | MaikRiechert |
| adp-multi-monadiccp | 7 | 0.0 | 1 | Subword construction in adp-multi using monadiccp | (algorithms, bioinformatics, bsd3, data-structures, library) | 2013-05-29 | 0.2.1 | MaikRiechert |
| bamstats | 12 | 0.0 | 1 | A program to extract various information from BAM alignmnet files. | (bioinformatics, library, program) | 2013-10-18 | 0.4 | KetilMalde |
| bio | 68 | 0.0 | 2 | A bioinformatics library | (bioinformatics, library) | 2013-07-20 | 0.5.3 | GwernBranwen, KetilMalde |
| bioace | 5 | 0.0 | 1 | Library for reading ace assembly files | (bioinformatics, library) | 2012-06-19 | 0.0.1 | DanFornika |
| bioalign | 14 | 0.0 | 2 | Data structures and helper functions for calculating alignments | (bioinformatics, library) | 2012-06-19 | 0.0.5 | DanFornika |
| biocore | 10 | 0.0 | 20 | A bioinformatics library | (bioinformatics, library) | 2013-01-07 | 0.3.1 | KetilMalde |
| biofasta | 11 | 0.0 | 5 | Library for reading fasta sequence files | (bioinformatics, library) | 2013-01-10 | 0.0.3 | DanFornika |
| biofastq | 6 | 0.0 | 1 | A library for reading FASTQ files | (bioinformatics, library) | 2012-10-23 | 0.1 | KetilMalde |
| biohazard | 53 | 0.0 | 1 | bioinformatics support library | (bioinformatics, bsd3, library) | 2020-01-06 | 2.1 | ustenzel |
| biophd | 22 | 0.0 | 1 | Library for reading phd sequence files | (bioinformatics, library) | 2015-05-20 | 0.0.8 | DanFornika |
| biopsl | 14 | 0.0 | 1 | Library and executables for working with PSL files | (bioinformatics, library, program) | 2012-11-19 | 0.4 | KetilMalde |
| biosff | 29 | 0.0 | 1 | Library and executables for working with SFF files | (bioinformatics, lgpl, library) | 2013-09-28 | 0.3.7.1 | KetilMalde |
| biostockholm | 42 | 0.0 | 1 | Parsing and rendering of Stockholm files (used by Pfam, Rfam and Infernal). | (bioinformatics, bsd3, library) | 2015-07-21 | 0.3.4 | FelipeLessa |
| birch-beer | 64 | 0.0 | 1 | Plot a colorful tree. | (bioinformatics, gpl, library, program) | 2022-10-06 | 0.4.2.1 | GregorySchwartz |
| blastxml | 15 | 0.0 | 3 | Library for reading Blast XML output | (bioinformatics, library) | 2014-10-29 | 0.3.2 | KetilMalde |
| blosum | 11 | 0.0 | 0 | BLOSUM generator | (bioinformatics, gpl, library, program) | 2016-11-30 | 0.1.1.4 | GregorySchwartz |
| classify-frog | 11 | 0.0 | 1 | Classify sounds produced by Xenopus laevis | (bioinformatics, bsd3, program) | 2019-08-13 | 0.2.4.3 | HenningThielemann |
| clustertools | 13 | 0.0 | 1 | Tools for manipulating sequence clusters | (bioinformatics, program) | 2011-06-06 | 0.1.5 | GwernBranwen, KetilMalde |
| cmv | 27 | 1.5 | 0 | Detailed visualization of CMs, HMMs and their comparisions | (bioinformatics, gpl, library, program) | 2018-01-28 | 1.0.8 | FlorianEggenhofer |
| collapse-duplication | 7 | 0.0 | 0 | Collapse the duplication output into clones and return their frequencies. | (bioinformatics, gpl, library, program) | 2018-08-28 | 0.4.0.1 | GregorySchwartz |
| convert-annotation | 25 | 0.0 | 0 | Convert the annotation of a gene to another in a delimited file using a variety of different databases. | (bioinformatics, gpl, library, program) | 2018-02-07 | 0.5.1.0 | GregorySchwartz |
| dephd | 25 | 0.0 | 1 | Analyze quality of nucleotide sequences. | (bioinformatics, program) | 2011-03-21 | 0.1.6 | GwernBranwen, KetilMalde |
| differential | 18 | 0.0 | 1 | Finds out whether an entity comes from different distributions (statuses). | (bioinformatics, gpl, library, program) | 2021-02-05 | 0.2.0.1 | GregorySchwartz |
| diversity | 89 | 0.0 | 3 | Quantify the diversity of a population | (bioinformatics, gpl, library, program) | 2017-09-01 | 0.8.1.0 | GregorySchwartz |
| elynx | 105 | 0.0 | 0 | Validate and (optionally) redo ELynx analyses | (bioinformatics, gpl, program) | 2024-10-27 | 0.8.0.0 | dschrempf |
| elynx-markov | 112 | 0.0 | 1 | Simulate molecular sequences along trees | (bioinformatics, gpl, library) | 2024-10-27 | 0.8.0.0 | dschrempf |
| elynx-nexus | 97 | 0.0 | 1 | Import and export Nexus files | (bioinformatics, gpl, library) | 2024-10-27 | 0.8.0.0 | dschrempf |
| elynx-seq | 123 | 0.0 | 3 | Handle molecular sequences | (bioinformatics, gpl, library) | 2024-10-27 | 0.8.0.0 | dschrempf |
| elynx-tools | 122 | 0.0 | 5 | Tools for ELynx | (bioinformatics, gpl, library) | 2024-10-27 | 0.8.0.0 | dschrempf |
| elynx-tree | 104 | 0.0 | 4 | Handle phylogenetic trees | (bioinformatics, gpl, library) | 2023-06-23 | 0.7.2.2 | dschrempf |
| estreps | 14 | 0.0 | 1 | Repeats from ESTs | (bioinformatics, program) | 2009-10-07 | 0.3.1 | GwernBranwen, KetilMalde |
| flower | 35 | 0.0 | 1 | Analyze 454 flowgrams (.SFF files) | (bioinformatics, program) | 2013-09-19 | 0.7.2 | KetilMalde |
| flowsim | 35 | 0.0 | 1 | Simulate 454 pyrosequencing | (bioinformatics, gpl, program) | 2013-11-19 | 0.3.5 | KetilMalde |
| gact | 9 | 0.0 | 1 | General Alignment Clustering Tool | (bioinformatics, program) | 2012-03-26 | 0.2 | KetilMalde |
| heatitup | 10 | 0.0 | 0 | Find and annotate ITDs. | (bioinformatics, gpl, library, program) | 2019-06-13 | 0.5.4.0 | GregorySchwartz |
| heatitup-complete | 18 | 0.0 | 0 | Find and annotate ITDs with assembly or read pair joining. | (bioinformatics, gpl, library, program) | 2020-02-17 | 0.5.5.0 | GregorySchwartz |
| hemokit | 38 | 0.0 | 1 | Haskell port of the Emokit EEG project | (bioinformatics, library, mit, program) | 2015-08-19 | 0.6.6 | NiklasHambuechen, PatrickChilton |
| hierarchical-spectral-clustering | 55 | 0.0 | 2 | Hierarchical spectral clustering of a graph. | (bioinformatics, gpl, library, program) | 2019-09-26 | 0.5.0.1 | GregorySchwartz |
| hs-samtools | 25 | 0.0 | 0 | Read and write SAM, BAM, and CRAM files. | (bioinformatics, bsd3, library) | 2024-07-15 | 0.10.0.3 | MatthewMosior |
| hyraxAbif | 64 | 0.0 | 1 | Modules for parsing, generating and manipulating AB1 files. | (ab1, abif, bioinformatics, chromatogram, library, program) | 2023-12-08 | 0.2.4.5 | andrevdm |
| integreat | 5 | 0.0 | 0 | Integrate different assays. | (bioinformatics, gpl, library, program) | 2018-05-16 | 0.2.2.1 | GregorySchwartz |
| korfu | 6 | 0.0 | 1 | The Korfu ORF Utility | (bioinformatics, program) | 2010-09-10 | 0.2 | KetilMalde |
| memexml | 14 | 0.0 | 1 | Library for reading Meme XML output | (bioinformatics, bsd3, library) | 2015-09-11 | 0.0.3 | FlorianEggenhofer |
| mmtf | 19 | 0.0 | 1 | Macromolecular Transmission Format implementation | (bioinformatics, bsd3, library) | 2019-02-10 | 0.1.3.1 | zmactep |
| modify-fasta | 38 | 0.0 | 0 | Modify fasta (and CLIP) files in several optional ways | (bioinformatics, gpl, library, program) | 2018-04-02 | 0.8.3.0 | GregorySchwartz |
| modularity | 20 | 0.0 | 2 | Find the modularity of a network. | (bioinformatics, gpl, library) | 2019-08-08 | 0.2.1.1 | GregorySchwartz |
| normalize | 21 | 0.0 | 0 | Normalize data using a variety of methods. | (bioinformatics, gpl, library, program) | 2018-06-29 | 0.3.1.1 | GregorySchwartz |
| phybin | 56 | 0.0 | 1 | Utility for clustering phylogenetic trees in Newick format based on Robinson-Foulds distance. | (bioinformatics, bsd3, library, program) | 2013-09-20 | 0.3 | RyanNewton |
| pipes-ordered-zip | 29 | 0.0 | 0 | merge two ordered Producers into a new Producer | (bioinformatics, bsd3, library) | 2021-02-25 | 1.2.1 | stephan_schiffels |
| ploterific | 29 | 0.0 | 1 | Basic plotting of tabular data for the command line. | (bioinformatics, gpl, library, program) | 2022-04-14 | 0.2.1.4 | GregorySchwartz |
| rank-product | 38 | 0.0 | 2 | Find the rank product of a data set. | (bioinformatics, gpl, library, program) | 2018-09-12 | 0.2.2.0 | GregorySchwartz |
| rbr | 10 | 0.0 | 1 | Mask nucleotide (EST) sequences in Fasta format | (bioinformatics, program) | 2010-09-09 | 0.8.6 | GwernBranwen, KetilMalde |
| samtools | 37 | 0.0 | 5 | Binding to the C samtools library | (bioinformatics, library, mit) | 2016-05-30 | 0.2.4.3 | NicholasIngolia |
| samtools-conduit | 14 | 0.0 | 1 | Conduit interface to SAM/BAM format files through samtools | (bioinformatics, library, mit, program) | 2014-11-29 | 0.1.1.0 | NicholasIngolia |
| samtools-enumerator | 8 | 0.0 | 1 | Enumerator interface to SamTools library | (bioinformatics, library, mit) | 2012-01-21 | 0.1.2.1 | NicholasIngolia |
| samtools-iteratee | 13 | 0.0 | 1 | Iteratee interface to SamTools library | (bioinformatics, library, mit) | 2014-01-24 | 0.2.2.1 | NicholasIngolia |
| seqloc | 37 | 0.0 | 3 | Handle sequence locations for bioinformatics | (bioinformatics, library, mit) | 2015-01-16 | 0.6.1.1 | NicholasIngolia |
| seqloc-datafiles | 40 | 0.0 | 1 | Read and write BED and GTF format genome annotations | (bioinformatics, library, mit, program) | 2015-03-20 | 0.4.2 | NicholasIngolia |
| sequence-formats | 131 | 0.0 | 1 | A package with basic parsing utilities for several Bioinformatic data formats. | (bioinformatics, gpl, library) | 2024-11-08 | 1.10.0.0 | stephan_schiffels |
| sequenceTools | 29 | 0.0 | 0 | A package with tools for processing DNA sequencing data | (bioinformatics, gpl, library, program) | 2023-04-18 | 1.5.3.1 | stephan_schiffels |
| sgrep | 5 | 0.0 | 1 | Sgrep - grep Fasta files for sequences matching a regular expression | (bioinformatics, program) | 2010-09-13 | 0.0 | KetilMalde |
| simseq | 6 | 0.0 | 1 | Simulate sequencing with different models for priming and errors | (bioinformatics, program) | 2008-03-08 | 0.0 | GwernBranwen |
| slynx | 116 | 0.0 | 0 | Handle molecular sequences | (bioinformatics, gpl, library, program) | 2024-10-27 | 0.8.0.0 | dschrempf |
| smiles | 14 | 0.0 | 1 | (bioinformatics, bsd3, library) | 2017-08-15 | 0.2.0.0 | fonturacetamum | |
| subsample | 6 | 0.0 | 0 | Subsample data. | (bioinformatics, gpl, library, program) | 2018-05-16 | 0.1.0.0 | GregorySchwartz |
| tex-join-bib | 8 | 0.0 | 0 | Compile separate tex files with the same bibliography. | (bioinformatics, gpl, library, program) | 2020-03-12 | 0.1.0.0 | GregorySchwartz |
| tlynx | 119 | 0.0 | 0 | Handle phylogenetic trees | (bioinformatics, gpl, library, program) | 2024-10-27 | 0.8.0.0 | dschrempf |
| too-many-cells | 86 | 0.0 | 0 | Cluster single cells and analyze cell clade relationships. | (bioinformatics, gpl, library, program) | 2022-10-06 | 3.0.1.0 | GregorySchwartz |
| trimpolya | 5 | 0.0 | 1 | Search for, annotate and trim poly-A tail | (bioinformatics, program) | 2009-12-15 | 0 | KetilMalde |
| twobitreader | 6 | 0.0 | 0 | reader for the 2bit file format | (bioinformatics, bsd3, library, program) | 2024-09-12 | 1.0 | ustenzel |
| varan | 12 | 0.0 | 1 | Process mpileup output to identify significant differences | (bioinformatics, program) | 2014-12-01 | 0.5.1 | KetilMalde |
| vcf | 6 | 2.0 | 1 | A package to parse VCF files inspired in similar python libraries | (bioinformatics, library, mit) | 2017-08-10 | 0.9.0 | juanpaucar |
| xml2x | 12 | 0.0 | 1 | Convert BLAST output in XML format to CSV or HTML | (bioinformatics, program) | 2009-10-07 | 0.4.2 | GwernBranwen, KetilMalde |
| xsact | 10 | 0.0 | 1 | Cluster EST sequences | (bioinformatics, program) | 2010-09-09 | 1.7.3 | GwernBranwen, KetilMalde |
| zsyntax | 5 | 0.0 | 0 | Automated theorem prover for the Zsyntax biochemical calculus | (bioinformatics, bsd3, library, logic, theorem-provers) | 2018-12-15 | 0.2.0.0 | fsestini |