BiobaseFasta: streaming FASTA parser
Stream-based handling of FASTA files. The user selects a window size, the library then handles the window. For each window, the previous (past) window is available, in case some data sits on the boundary between windows.
Greg Schwartz' http://hackage.haskell.org/package/fasta package is a lot more complete. This one is mostly tailored to my usage requirements (and may at some point use his library).
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- BiobaseFasta-0.4.0.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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Versions [RSS] | 0.0.0.1, 0.0.0.2, 0.0.0.3, 0.0.0.4, 0.0.1.0, 0.2.0.0, 0.3.0.0, 0.3.0.1, 0.4.0.0, 0.4.0.1 |
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Change log | changelog.md |
Dependencies | base (>=4.7 && <5.0), BiobaseFasta, BiobaseTypes (>=0.2.1 && <0.2.2), bytestring, DPutils (>=0.1.1 && <0.1.2), lens (>=4.0), optparse-applicative (>=0.14), resourcet (>=1.0), streaming (>=0.1), streaming-bytestring (>=0.2), string-conversions (>=0.4) [details] |
License | BSD-3-Clause |
Copyright | Christian Hoener zu Siederdissen, 2011-2021 |
Author | Christian Hoener zu Siederdissen |
Maintainer | choener@bioinf.uni-leipzig.de |
Category | Bioinformatics |
Home page | https://github.com/choener/BiobaseFasta |
Bug tracker | https://github.com/choener/BiobaseFasta/issues |
Source repo | head: git clone git://github.com/choener/BiobaseFasta |
Uploaded | by ChristianHoener at 2021-06-04T13:59:41Z |
Distributions | |
Reverse Dependencies | 4 direct, 0 indirect [details] |
Executables | fastaextract |
Downloads | 7381 total (12 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
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Status | Docs available [build log] Last success reported on 2021-06-04 [all 1 reports] |