BiobaseTypes: Collection of types for bioinformatics
Types used in a number of bioinformatics libraries.
linear indices
energies
biostring wrappers
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Modules
[Index] [Quick Jump]
- Biobase
- Types
- Biobase.Types.Accession
- Biobase.Types.BioSequence
- Biobase.Types.Bitscore
- Biobase.Types.Codon
- Biobase.Types.Energy
- Biobase.Types.Evalue
- Biobase.Types.Index
- Biobase.Types.Location
- Biobase.Types.Names
- Biobase.Types.Position
- Biobase.Types.ReadingFrame
- Biobase.Types.Shape
- Biobase.Types.Strand
- Biobase.Types.Structure
- Biobase.Types.Taxonomy
- Types
- DP
Downloads
- BiobaseTypes-0.2.1.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
| Versions [RSS] | 0.0.2.1, 0.0.2.2, 0.1.1.0, 0.1.1.1, 0.1.2.0, 0.1.2.1, 0.1.3.0, 0.1.4.0, 0.2.0.0, 0.2.0.1, 0.2.1.0 |
|---|---|
| Change log | changelog.md |
| Dependencies | aeson (>=0.8), attoparsec (>=0.13), base (>=4.7 && <5.0), bimaps (>=0.1.0 && <0.1.1), binary (>=0.7), bytestring, cereal (>=0.4), cereal-text (>=0.1), cereal-vector (>=0.2), containers, data-default (>=0.5), deepseq (>=1.4), DPutils (>=0.1.1 && <0.1.2), ForestStructures (>=0.0.1 && <0.0.2), hashable (>=1.2), intern (>=0.9), lens (>=4.0), mtl, primitive (>=0.5), PrimitiveArray (>=0.10.1.1 && <0.10.2), QuickCheck (>=2.7), SciBaseTypes (>=0.1.1 && <0.1.2), streaming (>=0.1), string-conversions (>=0.4), text (>=1.0), text-binary (>=0.2), utf8-string (>=1.0), vector (>=0.10), vector-binary-instances (>=0.2), vector-th-unbox (>=0.2) [details] |
| Tested with | ghc ==8.8, ghc ==8.10, ghc ==9.0 |
| License | BSD-3-Clause |
| Copyright | Christian Hoener zu Siederdissen, 2015 - 2021 |
| Author | Christian Hoener zu Siederdissen, 2015 - 2021 |
| Maintainer | choener@bioinf.uni-leipzig.de |
| Category | Data Structures, Bioinformatics |
| Home page | https://github.com/choener/BiobaseTypes |
| Bug tracker | https://github.com/choener/BiobaseTypes/issues |
| Source repo | head: git clone git://github.com/choener/BiobaseTypes |
| Uploaded | by ChristianHoener at 2021-06-04T12:19:46Z |
| Distributions | |
| Reverse Dependencies | 12 direct, 11 indirect [details] |
| Downloads | 8452 total (2 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Last success reported on 2021-06-04 [all 1 reports] |
Readme for BiobaseTypes-0.2.1.0
[back to package description]
BiobaseTypes
A bunch of types in use in different modules:
- numerical small and large numbers
- Gibbs free energy change
- phantom-typed linear indices: these encode the (rather annoying) habit of computational biology of having both 0-based and 1-based data
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/