CMCompare: Infernal covariance model comparison
Compares two Infernal covariance models. Returns the common MaxiMin score and the offending RNA sequence. High scores point toward low discriminative power of the two models. Based on:
"Christian Höner zu Siederdissen, and Ivo L. Hofacker. 2010. Discriminatory power of RNA family models. Bioinformatics 26, no. 18: 453–59"
http://bioinformatics.oxfordjournals.org/content/26/18/i453.long
Downloads
- CMCompare-0.0.1.5.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.0.1.1, 0.0.1.2, 0.0.1.4, 0.0.1.5 |
|---|---|
| Dependencies | array (>=0.4), base (>=4 && <5), BiobaseInfernal (>=0.7.0.1), BiobaseXNA (>=0.6.3.1), cmdargs (>=0.10), containers (>=0.4), lens (>=3 && <4) [details] |
| License | GPL-3.0-only |
| Copyright | Christian Hoener zu Siederdissen, Ivo L. Hofacker, 2010 |
| Author | Christian Hoener zu Siederdissen, Ivo L. Hofacker |
| Maintainer | choener@tbi.univie.ac.at |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/software/cmcompare/ |
| Uploaded | by ChristianHoener at 2012-11-22T14:57:12Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | CMCompare |
| Downloads | 4105 total (11 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs uploaded by user Build status unknown [no reports yet] |