BiobaseTrainingData: RNA folding training data

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Parameter training for RNA secondary structure prediction tools requires data to train on. Since there are a number of different available formats, and handling them all in the training tools is a pain, we have this library and programs. MkTrainingData transforms different formats and they all produce a common "training data" format. This format is Haskell-readable (and only partially human-readable) line-by-line. Generating additional training data is therefor easy as one can just "cat" together different training files.

Note that several features are designed around extended RNA secondary structures.

Now with some filtering and manipulation options.

Versions [RSS] [faq],,,,
Dependencies base (>3 && <5), BiobaseDotP, BiobaseFR3D, BiobaseXNA (>=, bytestring, cmdargs (==0.8.*), either-unwrap, iteratee, vector [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Category Bioinformatics
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Uploaded by ChristianHoener at 2011-09-29T13:24:59Z
Distributions NixOS:
Executables MkTrainingData
Downloads 4629 total (27 in the last 30 days)
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