ViennaRNA-extras: ViennaRNA v2 extensions

[ bioinformatics, bsd3, library ] [ Propose Tags ]

Extra functionality on top of the ViennaRNA bindings. Please note the special license of the ViennaRNA bindings (while the -extras library is BSD3, it is not very useful without the bindings)!

If you use this software, please cite:

R. Lorenz, S.H. Bernhart, C. Hoener zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler and I.L. Hofacker (2011)
ViennaRNA Package 2.0
Algorithms for Molecular Biology: 6:26

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Enable bounds checking and various other debug operations


Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info


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Dependencies array, attoparsec (>=0.13), base (>=4.7 && <5.0), BiobaseTypes (>=0.1.3 && <0.1.4), BiobaseXNA (>=0.10.0 && <0.10.1), bytestring, deepseq (>=1.4), lens (>=4.0), QuickCheck (>=2.0), streaming (>=0.1), streaming-bytestring (>=0.1), strict (>=0.3), strict-base-types (>=0.5), ViennaRNA-bindings (>=0.233.2 && <0.233.3) [details]
License BSD-3-Clause
Copyright Christian Hoener zu Siederdissen, 2017
Author Christian Hoener zu Siederdissen, 2017
Category Bioinformatics
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Source repo head: git clone git://
Uploaded by ChristianHoener at 2017-11-23T22:28:17Z
Reverse Dependencies 1 direct, 0 indirect [details]
Downloads 1075 total (4 in the last 30 days)
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Status Docs available [build log]
Last success reported on 2017-11-23 [all 1 reports]

Readme for ViennaRNA-extras-

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ViennaRNA extras

A number of high-level functions that extend the functionality provided by ViennaRNA-bindings.


Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany