ViennaRNA-extras: ViennaRNA v2 extensions
Extra functionality on top of the ViennaRNA bindings. Please note the special license of the ViennaRNA bindings (while the -extras library is BSD3, it is not very useful without the bindings)!
If you use this software, please cite:
R. Lorenz, S.H. Bernhart, C. Hoener zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler and I.L. Hofacker (2011) ViennaRNA Package 2.0 Algorithms for Molecular Biology: 6:26
http://www.almob.org/content/6/1/26
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Modules
[Index]
Flags
Manual Flags
| Name | Description | Default |
|---|---|---|
| debug | Enable bounds checking and various other debug operations | Disabled |
Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info
Downloads
- ViennaRNA-extras-0.0.0.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.0.0.1 |
|---|---|
| Change log | changelog.md |
| Dependencies | array, attoparsec (>=0.13), base (>=4.7 && <5.0), BiobaseTypes (>=0.1.3 && <0.1.4), BiobaseXNA (>=0.10.0 && <0.10.1), bytestring, deepseq (>=1.4), lens (>=4.0), QuickCheck (>=2.0), streaming (>=0.1), streaming-bytestring (>=0.1), strict (>=0.3), strict-base-types (>=0.5), ViennaRNA-bindings (>=0.233.2 && <0.233.3) [details] |
| Tested with | ghc ==8.0.2, ghc ==8.2.1 |
| License | BSD-3-Clause |
| Copyright | Christian Hoener zu Siederdissen, 2017 |
| Author | Christian Hoener zu Siederdissen, 2017 |
| Maintainer | choener@bioinf.uni-leipzig.de |
| Category | Bioinformatics |
| Home page | https://github.com/choener/ViennaRNA-extras |
| Bug tracker | https://github.com/choener/ViennaRNA-extras/issues |
| Source repo | head: git clone git://github.com/choener/ViennaRNA-extras |
| Uploaded | by ChristianHoener at 2017-11-23T22:28:17Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Downloads | 1104 total (4 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Last success reported on 2017-11-23 [all 1 reports] |
Readme for ViennaRNA-extras-0.0.0.1
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ViennaRNA extras
A number of high-level functions that extend the functionality provided by ViennaRNA-bindings.
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/