Gene-CluEDO: Hox gene clustering
Gene Cluster Evolution Determined Order
Expansion of Gene Clusters and the Shortest Hamiltonian Path Problem*, Prohaska et al, 2017
Calculate the most likely order of genes in a gene cluster.
Apart from being an interesting problem in computational biology, it also serves as an example problem for dynamic programming over unordered sets with interfaces.
Binaries available from github: https://github.com/choener/Gene-CluEDO/releases
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- Gene-CluEDO-0.0.0.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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Versions [RSS] | 0.0.0.1, 0.0.0.2 |
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Change log | changelog.md |
Dependencies | ADPfusion (>=0.5.2 && <0.5.3), ADPfusionSet (>=0.0.0 && <0.0.1), base (>=4.7 && <5.0), cmdargs (>=0.10), containers, filepath, FormalGrammars (>=0.3.1 && <0.3.2), Gene-CluEDO, log-domain (>=0.10), PrimitiveArray (>=0.8.0 && <0.8.1), PrimitiveArray-Pretty (>=0.0.0 && <0.0.1), ShortestPathProblems (>=0.0.0 && <0.0.1), text (>=1.0), vector (>=0.11) [details] |
Tested with | ghc ==8.0.2 |
License | GPL-3.0-only |
Copyright | Christian Hoener zu Siederdissen, 2017 |
Author | Christian Hoener zu Siederdissen, 2017 |
Maintainer | choener@bioinf.uni-leipzig.de |
Category | Bioinformatics |
Home page | https://github.com/choener/Gene-CluEDO |
Bug tracker | https://github.com/choener/Gene-CluEDO/issues |
Source repo | head: git clone git://github.com/choener/Gene-CluEDO this: git clone git://github.com/choener/Gene-CluEDO/tree/0.0.0.2(tag 0.0.0.2) |
Uploaded | by ChristianHoener at 2017-09-11T12:12:23Z |
Distributions | |
Executables | GeneCluEDO |
Downloads | 1836 total (0 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
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Status | Docs available [build log] Last success reported on 2017-09-11 [all 1 reports] |