BiobaseHTTPTools: Tools to query Bioinformatics HTTP services e.g. Entrez, Ensembl.

[ bioinformatics, gpl, program ] [ Propose Tags ]

BiobaseHTTP provides tools to interface the Bioinformatics REST services, currently Entrez, Ensembl.

Usage instructions can be found in the README

Currently following Tools are included:

  • FetchSequences: Retrieves sequence in fasta format

  • AccessionToTaxId: Converts NCBI accession number to taxonomy id

  • GeneIdToGOTerms: Retrieve GOterms for a Ensembl GeneId

  • GeneIdToUniProtId Retrieves UniProtId for a Ensembl GeneId


Note: This package has metadata revisions in the cabal description newer than included in the tarball. To unpack the package including the revisions, use 'cabal get'.

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Versions [RSS] 1.0.0
Dependencies base (>=4.5 && <5), BiobaseFasta (==, BiobaseHTTP (>=1.1.0), bytestring, cmdargs, containers, either-unwrap, hxt, text [details]
License GPL-3.0-only
Author Florian Eggenhofer
Revised Revision 1 made by FlorianEggenhofer at 2019-05-28T05:50:40Z
Category Bioinformatics
Source repo head: git clone
this: git clone 1.1.0)
Uploaded by FlorianEggenhofer at 2018-12-13T19:11:11Z
Executables GeneIdToGOTerms, GeneIdToUniProtId, AccessionToTaxId, FetchSequence
Downloads 816 total (6 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2018-12-13 [all 3 reports]