BiobaseInfernal: Infernal data structures and tools
Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.
The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.
Changes in 0.5.4.1
fix-up for VH export
half-baked CM type (not useful yet)
Modules
[Index]
Downloads
- BiobaseInfernal-0.5.4.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
| Versions [RSS] | 0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0, 0.8.1.0 |
|---|---|
| Dependencies | attoparsec, attoparsec-iteratee, base (>3 && <5), bytestring, containers, either-unwrap, iteratee, PrimitiveArray, transformers, tuple, vector [details] |
| License | GPL-3.0-only |
| Copyright | Christian Hoener zu Siederdissen, 2011 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Uploaded | by ChristianHoener at 2011-09-21T14:40:50Z |
| Distributions | |
| Reverse Dependencies | 3 direct, 0 indirect [details] |
| Downloads | 15783 total (46 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs uploaded by user Build status unknown [no reports yet] |