BiobaseInfernal: Infernal data structures and tools

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

With the BioHaskell library split, this package is officially back! And the package is not feature-complete yet, take the above as a will-include-soon list.

The taxonomy importer makes use of Iteratee.zip, hence the switch from Enumerator. (See the Biohaskell wiki pages for discussion on Iteratee/Enumerator).

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Versions [RSS] 0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0, 0.8.1.0
Dependencies attoparsec, attoparsec-iteratee, base (>3 && <5), bytestring, containers, either-unwrap, iteratee, transformers, tuple [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Uploaded by ChristianHoener at 2011-08-08T01:54:56Z
Distributions NixOS:0.8.1.0
Downloads 15202 total (20 in the last 30 days)
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Status Docs uploaded by user
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