heatitup: Find and annotate ITDs.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.

Modules

Classify
Diffusion
Load
Plot
Print
Repeated
Spacer
Types
Utility

Downloads

heatitup-0.5.4.0.tar.gz [browse] (Cabal source package)
Package description (as included in the package)

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Package maintainers

GregorySchwartz

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Versions [RSS]	0.5.3.3, 0.5.4.0
Dependencies	base (>=4.7 && <5), bytestring, bytestring-show, cassava, colour, containers, diagrams-core, diagrams-html5, diagrams-lib, diagrams-pgf, diagrams-rasterific, diagrams-svg, edit-distance, fasta, heatitup, lens, optparse-applicative, pipes, pipes-bytestring, pipes-csv, safe, string-similarity, stringsearch, suffixtree, vector [details]
License	GPL-3.0-only
Copyright	2019 Gregory W. Schwartz
Author	Gregory W. Schwartz
Maintainer	gsch@pennmedicine.upenn.edu
Category	Bioinformatics
Home page	http://github.com/GregorySchwartz/heatitup#readme
Source repo	head: git clone https://github.com/githubuser/heatitup
Uploaded	by GregorySchwartz at 2019-06-13T19:06:17Z
Distributions
Executables	heatitup
Downloads	1131 total (9 in the last 30 days)
Rating	(no votes yet) [estimated by Bayesian average]
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Status	Docs not available [build log] All reported builds failed as of 2019-06-13 [all 3 reports]