flower: Analyze 454 flowgrams (.SFF files)
flower - FLOWgram ExtractoR tools
This is now obsolete, please install the biosff library
(which includes the flower
exectuable) instead.
The flower executable reads files in SFF-format and produces various output,
including sequences with quality, or flowgram data in tabular format. By default,
it outputs a textual representation of the data in the SFF-file, much like
sffinfo
from Roche does.
The flowselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various quality criteria.
The flowt program removes (artificial) duplicates from SFF files. It's currently a work in progress, but included if you'd like to play with it. It's faster than other approaches (e.g. CD-HIT), and ought to be more sensitive and specific, but this needs to be proven.
Downloads
- flower-0.7.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
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Versions [RSS] | 0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2 |
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Dependencies | array (>=0.1), base (>=3 && <5), binary (>=0.4 && <0.5), bio (>0.4.9), bytestring (>=0.9.1), cmdargs (>=0.5), containers, mtl, random [details] |
Tested with | ghc ==6.8.3, ghc ==6.12.1 |
License | LicenseRef-GPL |
Author | Ketil Malde |
Maintainer | Ketil Malde <ketil@malde.org> |
Category | Bioinformatics |
Home page | http://biohaskell.org/Applications/Flower |
Uploaded | by KetilMalde at 2013-09-19T06:28:19Z |
Distributions | |
Reverse Dependencies | 1 direct, 0 indirect [details] |
Executables | flowt, flowselect, flower |
Downloads | 9734 total (28 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs available [build log] Successful builds reported [all 1 reports] |