Name:           flower
Version:        0.7.2
License:        GPL
Cabal-Version:  >= 1.6
Author:         Ketil Malde
Maintainer:     Ketil Malde <ketil@malde.org>

Category:       Bioinformatics
Synopsis:       Analyze 454 flowgrams  (.SFF files)
Description:    flower - FLOWgram ExtractoR tools
		.
		This is now obsolete, please install the biosff library 
		(which includes the 'flower' exectuable) instead.
                .
                The flower executable reads files in SFF-format and produces various output, 
                including sequences with quality, or flowgram data in tabular format.  By default,
                it outputs a textual representation of the data in the SFF-file, much like
                'sffinfo' from Roche does.
                .
                The flowselect executable extracts reads from SFF-files, generating a new
                SFF-file with a subset of the reads based on various quality criteria.
		.
		The flowt program removes (artificial) duplicates from SFF files.  It's currently a work
		in progress, but included if you'd like to play with it.  It's faster than other approaches 
		(e.g. CD-HIT), and ought to be more sensitive and specific, but this needs to be proven.
HomePage:       http://biohaskell.org/Applications/Flower
-- Source-Repository: http//malde.org/~ketil/biohaskell/flower
Build-Type:     Simple
Tested-with:    GHC==6.8.3, GHC==6.12.1
Extra-Source-Files:  test.sh

-- Data-files:     README
Executable     flower
    Main-Is:        Flower.hs
    Other-Modules:  Print, Metrics, Options, Fork
    Hs-Source-Dirs: src
    Ghc-Options:    -Wall -threaded
    Build-Depends:  bio >= 0.4.9, base >=3 && <5, array >= 0.1, bytestring >= 0.9.1, binary == 0.4.*, random, cmdargs >= 0.5, containers, mtl

Executable     flowselect
    Main-Is:        FlowSelect.hs
    Other-Modules:  Metrics
    Hs-Source-Dirs: src
    Ghc-Options:    -Wall
    Build-Depends:  bio >= 0.4.9, random, base >= 3 && < 5
    Extensions:     ExistentialQuantification

Executable     flowt
    Main-Is:        Flowt.hs
    Hs-Source-Dirs: src
    if impl(ghc >= 6.12)
      Ghc-Options:     -Wall -fno-warn-unused-do-bind
    else
      Ghc-Options:     -Wall
    Build-Depends:  bio > 0.4.9, base >= 3 && < 5, cmdargs >= 0.5, containers, bytestring >= 0.9.1
    Extensions:     DeriveDataTypeable