xsact: Cluster EST sequences

[ bioinformatics, program ] [ Propose Tags ]

Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries:

  • xsact; implements a complete multiple-matching clustering algorithm.

  • xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters.

  • xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words.


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Versions [RSS] 1.6, 1.7.2, 1.7.3
Dependencies array, base (>3 && <4.2), containers, directory, process, random, unix [details]
License LicenseRef-GPL
Author Ketil Malde
Maintainer Ketil Malde <ketil@malde.org>
Category Bioinformatics
Home page http://malde.org/~ketil/
Uploaded by KetilMalde at 2010-09-09T20:31:18Z
Reverse Dependencies 1 direct, 0 indirect [details]
Executables xtract, xplit, xsact
Downloads 2500 total (6 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2016-12-29 [all 7 reports]