varan: Process mpileup output to identify significant differences

[ bioinformatics, program ] [ Propose Tags ]

Post-processing output from `samtools mpileup` to extract various information, including statistics (per-position or global), consensus sequence (in various formats), and textual visualizations.


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Versions [RSS] 0.3, 0.5, 0.5.1
Dependencies ansi-terminal, base (>=4 && <5), bytestring, cmdargs, mtl, parallel, random, statistics [details]
License LicenseRef-GPL
Author Ketil Malde
Maintainer Ketil Malde <>
Category Bioinformatics
Uploaded by KetilMalde at 2014-12-01T14:53:09Z
Reverse Dependencies 1 direct, 0 indirect [details]
Executables sparks, vextr, varan
Downloads 2299 total (6 in the last 30 days)
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Status Docs not available [build log]
Last success reported on 2016-12-12 [all 6 reports]