sgrep: Sgrep - grep Fasta files for sequences matching a regular expression

[ bioinformatics, program ] [ Propose Tags ]

This is a simple utility to extract sequences from Fasta files. It expects its first parameter to be a regular expression, and its second to be a Fasta-formatted file. It will then output all sequences matching the regexp to standard output.


Maintainer's Corner

Package maintainers

For package maintainers and hackage trustees


  • No Candidates
Versions [RSS] 0.0
Dependencies base (>=3 && <5), bio, regex-compat [details]
License LicenseRef-GPL
Author Ketil Malde
Maintainer Ketil Malde <>
Category Bioinformatics
Home page
Uploaded by KetilMalde at 2010-09-13T13:37:05Z
Reverse Dependencies 1 direct, 0 indirect [details]
Executables sgrep
Downloads 1064 total (6 in the last 30 days)
Rating (no votes yet) [estimated by Bayesian average]
Your Rating
  • λ
  • λ
  • λ
Status Docs not available [build log]
Successful builds reported [all 7 reports]