samtools: Binding to the C samtools library
Binding to the C samtools library, which reads and writes SAM format alignments, both binary and tab- delimited text formats. It also supports rapid access to specific alignments in a sorted BAM file and access to sequences from indexed Fasta files.
Flags
Automatic Flags
| Name | Description | Default |
|---|---|---|
| tests | Build test program | Disabled |
Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info
Downloads
- samtools-0.2.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
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| Versions [RSS] | 0.1, 0.1.1, 0.1.2, 0.1.3, 0.2, 0.2.0.1, 0.2.1, 0.2.1.1, 0.2.1.2, 0.2.2, 0.2.3, 0.2.4, 0.2.4.1, 0.2.4.2, 0.2.4.3 |
|---|---|
| Dependencies | base (>=4.5 && <5), bytestring, filepath, process, seqloc (>=0.3.1), vector (>=0.7) [details] |
| License | MIT |
| Author | Nicholas Ingolia |
| Maintainer | nick@ingolia.org |
| Category | Bioinformatics |
| Home page | http://www.ingolia-lab.org/samtools-tutorial.html |
| Source repo | head: git clone http://github.com/ingolia/samtools(samtools) |
| Uploaded | by NicholasIngolia at 2014-06-19T02:59:56Z |
| Distributions | |
| Reverse Dependencies | 5 direct, 0 indirect [details] |
| Executables | samtest |
| Downloads | 11349 total (37 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Successful builds reported [all 1 reports] |