DamagedBase | Bio.Bam.Pileup |
DamageModel | Bio.Adna |
DamageParameters | Bio.Adna |
damagePatternsIter | Bio.Adna |
damagePatternsIter2Bit | Bio.Adna |
damagePatternsIterMD | Bio.Adna |
DashPunctuation | Bio.Prelude |
Data | Bio.Prelude |
dataCast1 | Bio.Prelude |
dataCast2 | Bio.Prelude |
DataError | Bio.Iteratee.ZLib |
DataRemaining | Bio.Iteratee.Base, Bio.Iteratee.Iteratee, Bio.Iteratee.ListLike, Bio.Iteratee, Bio.Bam |
DataRep | Bio.Prelude |
DataType | Bio.Prelude |
dataTypeConstrs | Bio.Prelude |
dataTypeName | Bio.Prelude |
dataTypeOf | Bio.Prelude |
dataTypeRep | Bio.Prelude |
DB | Bio.Bam.Pileup |
db_call | Bio.Bam.Pileup |
db_dmg_pos | Bio.Bam.Pileup |
db_dmg_tk | Bio.Bam.Pileup |
db_qual | Bio.Bam.Pileup |
db_ref | Bio.Bam.Pileup |
Deadlock | |
1 (Data Constructor) | Bio.Prelude |
2 (Type/Class) | Bio.Prelude |
Deci | Bio.Prelude |
DecimalNumber | Bio.Prelude |
decodeAnyBam | Bio.Bam.Reader, Bio.Bam |
decodeAnyBamFile | Bio.Bam.Reader, Bio.Bam |
decodeAnyBamOrSam | Bio.Bam.Reader, Bio.Bam |
decodeAnyBamOrSamFile | Bio.Bam.Reader, Bio.Bam |
decodeBam | Bio.Bam.Reader, Bio.Bam |
decodeBytes | Bio.Prelude |
decodeFloat | Bio.Prelude |
decodeSam | Bio.Bam.Reader, Bio.Bam |
decodeSam' | Bio.Bam.Reader, Bio.Bam |
decompose | Bio.Bam.Pileup |
decompressBgzf | Bio.Iteratee.Bgzf, Bio.Bam.Reader, Bio.Bam |
decompressBgzfBlocks | Bio.Iteratee.Bgzf, Bio.Bam.Reader, Bio.Bam |
decompressBgzfBlocks' | Bio.Iteratee.Bgzf |
decompressBufferSize | Bio.Iteratee.ZLib |
decompressDictionary | Bio.Iteratee.ZLib |
decompressGzip | Bio.Util.Zlib |
DecompressParams | |
1 (Type/Class) | Bio.Iteratee.ZLib |
2 (Data Constructor) | Bio.Iteratee.ZLib |
decompressPlain | Bio.Iteratee.Bgzf |
decompressWindowBits | Bio.Iteratee.ZLib |
defaultBufSize | Bio.Iteratee.IO, Bio.Iteratee, Bio.Bam |
DefaultCompression | Bio.Iteratee.ZLib |
defaultCompressParams | Bio.Iteratee.ZLib |
defaultDecompressParams | Bio.Iteratee.ZLib |
defaultFileFlags | Bio.Prelude |
DefaultMemoryLevel | Bio.Iteratee.ZLib |
DefaultStrategy | Bio.Iteratee.ZLib |
DefaultWindowBits | Bio.Iteratee.ZLib |
default_fwd_adapters | Bio.Bam.Trim, Bio.Bam |
default_rev_adapters | Bio.Bam.Trim, Bio.Bam |
Deflated | Bio.Iteratee.ZLib |
Del | Bio.Bam.Rec, Bio.Bam |
Del' | Bio.Bam.Rmdup |
delete | Bio.Prelude |
deleteBy | Bio.Prelude |
deleted_bases | Bio.Bam.Pileup |
deleteE | Bio.Bam.Rec, Bio.Bam |
deleteFirstsBy | Bio.Prelude |
deletePQ | Bio.PriorityQueue |
denominator | Bio.Prelude |
Denormal | Bio.Prelude |
depth | Bio.Bam.Index, Bio.Bam |
dequeuePQ | Bio.PriorityQueue |
DeviceID | Bio.Prelude |
deviceID | Bio.Prelude |
die | Bio.Prelude |
digitToInt | Bio.Prelude |
directoryMode | Bio.Prelude |
disableAllocationLimit | Bio.Prelude |
displayException | Bio.Iteratee.Exception, Bio.Prelude, Bio.Iteratee.Base, Bio.Iteratee.Iteratee, Bio.Iteratee.ListLike, Bio.Iteratee, Bio.Bam |
distinctBin | Bio.Bam.Header, Bio.Bam |
div | Bio.Prelude |
div' | Bio.Prelude |
DivergentException | |
1 (Type/Class) | Bio.Iteratee.Exception, Bio.Iteratee.Base, Bio.Iteratee.Iteratee, Bio.Iteratee.ListLike, Bio.Iteratee, Bio.Bam |
2 (Data Constructor) | Bio.Iteratee.Exception, Bio.Iteratee.Base, Bio.Iteratee.Iteratee, Bio.Iteratee.ListLike, Bio.Iteratee, Bio.Bam |
DivideByZero | Bio.Prelude |
divMod | Bio.Prelude |
divMod' | Bio.Prelude |
DmgStats | |
1 (Type/Class) | Bio.Adna |
2 (Data Constructor) | Bio.Adna |
DmgToken | |
1 (Type/Class) | Bio.Bam.Pileup |
2 (Data Constructor) | Bio.Bam.Pileup |
doesNotExistErrorType | Bio.Prelude |
Double | Bio.Prelude |
Down | |
1 (Data Constructor) | Bio.Prelude |
2 (Type/Class) | Bio.Prelude |
DP | Bio.Adna |
dp_alpha | Bio.Adna |
dp_alpha3 | Bio.Adna |
dp_alpha5 | Bio.Adna |
dp_beta | Bio.Adna |
dp_beta3 | Bio.Adna |
dp_beta5 | Bio.Adna |
dp_gc_frac | Bio.Adna |
dp_mu | Bio.Adna |
dp_nu | Bio.Adna |
drop | Bio.Prelude |
dropStream | Bio.Iteratee.ListLike, Bio.Iteratee, Bio.Bam |
dropWhile | Bio.Prelude |
dropWhileEnd | Bio.Prelude |
dropWhileStream | Bio.Iteratee.ListLike, Bio.Iteratee, Bio.Bam |
dsd_delta | Bio.Adna |
dsd_lambda | Bio.Adna |
dsd_sigma | Bio.Adna |
Dual | |
1 (Data Constructor) | Bio.Prelude |
2 (Type/Class) | Bio.Prelude |
dup | Bio.Prelude |
dupChan | Bio.Prelude |
dupTo | Bio.Prelude |
Dynamic | Bio.Prelude |
dynApp | Bio.Prelude |
dynApply | Bio.Prelude |
dynTypeRep | Bio.Prelude |