Genbank: Libary for processing the NCBI genbank format
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Warnings:
- 'ghc-options: -O2' is rarely needed. Check that it is giving a real benefit and not just imposing longer compile times on your users.
- Exposed modules use unallocated top-level names: Bio
Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.
For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/
For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html
Bio.GenbankData - Datastructures for Genbank format
Contains Haskell datastructures for Genbank format and for contained features, subfeatures
Bio.GenbankParser - Parse Genbank format
Contains Haskell functions to parse Genbank format from files or internal Strings.
Bio.GenbankTools - Tools for processing Genbank
Contains Haskell functions to extract nucleotide sequences for features
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Properties
| Versions | 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.3 |
|---|---|
| Change log | None available |
| Dependencies | base (>=4.5 && <5), biocore, biofasta, bytestring, cmdargs, Genbank, parsec, split [details] |
| License | LicenseRef-GPL |
| Author | Florian Eggenhofer |
| Maintainer | egg@tbi.univie.ac.at |
| Category | Bioinformatics |
| Source repo | head: git clone https://github.com/eggzilla/Genbank this: git clone https://github.com/eggzilla/Genbank/tree/1.0.3(tag 1.0.3) |
| Uploaded | by FlorianEggenhofer at 2014-10-26T13:28:13Z |
Modules
[Index]
Downloads
- Genbank-1.0.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
Package maintainers
For package maintainers and hackage trustees
Readme for Genbank-1.0.3
[back to package description]#Genbank 
Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to:
http://www.ncbi.nlm.nih.gov/genbank/
For a sample genbank record see:
http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html
###Datastructures for Genbank format (GenbankData.hs) Contains Haskell datastructures for Genbank format and for contained features, subfeatures ###Parse Genbank format (GenbankParser.hs) Contains Haskell functions to parse Genbank format from files or internal Strings. ###Tools for processing Genbank (GenbankTools) Contains Haskell functions to extract nucleotide sequences for features