Genbank: Libary for processing the NCBI genbank format

This is a package candidate release! Here you can preview how this package release will appear once published to the main package index (which can be accomplished via the 'maintain' link below). Please note that once a package has been published to the main package index it cannot be undone! Please consult the package uploading documentation for more information.

[maintain] [Publish]

Warnings:

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.

For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

Bio.GenbankData - Datastructures for Genbank format

Contains Haskell datastructures for Genbank format and for contained features, subfeatures

Bio.GenbankParser - Parse Genbank format

Contains Haskell functions to parse Genbank format from files or internal Strings.

Bio.GenbankTools - Tools for processing Genbank

Contains Haskell functions to extract nucleotide sequences for features


[Skip to Readme]

Properties

Versions 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.3
Change log None available
Dependencies base (>=4.5 && <5), biocore, biofasta, bytestring, cmdargs, Genbank, parsec, split [details]
License LicenseRef-GPL
Author Florian Eggenhofer
Maintainer egg@tbi.univie.ac.at
Category Bioinformatics
Source repo head: git clone https://github.com/eggzilla/Genbank
this: git clone https://github.com/eggzilla/Genbank/tree/1.0.3(tag 1.0.3)
Uploaded by FlorianEggenhofer at 2014-10-26T13:28:13Z

Modules

[Index]

Downloads

Maintainer's Corner

Package maintainers

For package maintainers and hackage trustees


Readme for Genbank-1.0.3

[back to package description]

#Genbank Build Status

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to:

http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see:

http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

###Datastructures for Genbank format (GenbankData.hs) Contains Haskell datastructures for Genbank format and for contained features, subfeatures ###Parse Genbank format (GenbankParser.hs) Contains Haskell functions to parse Genbank format from files or internal Strings. ###Tools for processing Genbank (GenbankTools) Contains Haskell functions to extract nucleotide sequences for features