Genbank-1.0.3: Libary for processing the NCBI genbank format

Safe HaskellNone
LanguageHaskell98

Bio.GenbankData

Description

This module contains data structures for genbank format For more information on genbank consult: http://www.ncbi.nlm.nih.gov/genbank/ Genbank record sample: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

Synopsis

Documentation

data Feature Source

Genbank Feature - e.g gene, repeat region

Instances

data Attribute Source

Genbank attribute of feature or subfeature, either a flag field or a GO attribute

data SubFeature Source

Genbank subfeature, e.g. CDS, MiscFeature, NcRNA, Mobile Element, STS rRNA, tRNA, tmRNA, reporigin

data Reference Source

Genbank reference associating record with publication

data DbXRef Source

Constructors

DbXRef 

Fields

db :: ByteString
 
ref :: ByteString
 

Instances

data CoordinateSet Source

Set of coordinates, with type order, join

data OriginSlice Source

Slices of the nucleotide sequence contained in the Genbank record

Constructors

OriginSlice 

data GOterm Source

Gene Onthology term

Constructors

GOterm 

Fields

goType :: String
 
goId :: String
 
goName :: String
 

Instances