elynx-seq-0.1.0: Handle molecular sequences (Index - S)

elynx-seq-0.1.0: Handle molecular sequences

A
B
C
D
E
F
G
H
I
J
K
L
M
N
P
Q
R
S
T
U
V
W
X
Y
Z
All

Index - S

S
1 (Data Constructor)	ELynx.Data.Character.AminoAcidX
2 (Data Constructor)	ELynx.Data.Character.AminoAcidS
3 (Data Constructor)	ELynx.Data.Character.AminoAcidI
4 (Data Constructor)	ELynx.Data.Character.AminoAcid
5 (Data Constructor)	ELynx.Data.Character.NucleotideI
scale
1 (Function)	ELynx.Data.MarkovProcess.SubstitutionModel
2 (Function)	ELynx.Data.MarkovProcess.MixtureModel
Sequence
1 (Type/Class)	ELynx.Data.Sequence.Sequence
2 (Data Constructor)	ELynx.Data.Sequence.Sequence
sequencesToFasta	ELynx.Export.Sequence.Fasta
sequenceToFasta	ELynx.Export.Sequence.Fasta
setDiagonal	ELynx.Data.MarkovProcess.RateMatrix
setPopulationSize	ELynx.Data.Character.BoundaryMutation
showCounts	ELynx.Data.Character.BoundaryMutation
simulate	ELynx.Simulate.MarkovProcessAlongTree
simulateAndFlatten	ELynx.Simulate.MarkovProcessAlongTree
simulateAndFlattenMixtureModel	ELynx.Simulate.MarkovProcessAlongTree
simulateAndFlattenMixtureModelPar	ELynx.Simulate.MarkovProcessAlongTree
simulateMixtureModel	ELynx.Simulate.MarkovProcessAlongTree
siteprofiles	ELynx.Import.MarkovProcess.SiteprofilesPhylobayes
Standard	ELynx.Data.Character.Codon
State
1 (Type/Class)	ELynx.Data.Character.BoundaryMutation
2 (Type/Class)	ELynx.Simulate.MarkovProcess
stateSpace	ELynx.Data.Character.BoundaryMutation
stateSpaceSize	ELynx.Data.Character.BoundaryMutation
StationaryDistribution	ELynx.Data.MarkovProcess.RateMatrix
stationaryDistribution	ELynx.Data.MarkovProcess.SubstitutionModel
std	ELynx.Data.Alphabet.Alphabet
Stop
1 (Data Constructor)	ELynx.Data.Character.AminoAcidS
2 (Data Constructor)	ELynx.Data.Character.AminoAcidI
subSample	ELynx.Data.Sequence.Alignment
SubstitutionModel
1 (Type/Class)	ELynx.Data.MarkovProcess.SubstitutionModel
2 (Data Constructor)	ELynx.Data.MarkovProcess.PhyloModel
substitutionModel	ELynx.Data.MarkovProcess.SubstitutionModel
summarize
1 (Function)	ELynx.Data.MarkovProcess.SubstitutionModel
2 (Function)	ELynx.Data.MarkovProcess.MixtureModel
3 (Function)	ELynx.Data.MarkovProcess.PhyloModel
4 (Function)	ELynx.Data.Sequence.Sequence
5 (Function)	ELynx.Data.Sequence.Alignment
summarizeComponent	ELynx.Data.MarkovProcess.MixtureModel
summarizeGammaRateHeterogeneity	ELynx.Data.MarkovProcess.GammaRateHeterogeneity
summarizeSequences	ELynx.Data.Sequence.Sequence
summaryLength	ELynx.Data.Sequence.Defaults
summaryNSequences	ELynx.Data.Sequence.Defaults