sequence-formats: A package with basic parsing utilities for several Bioinformatic data formats.
This is a package candidate release! Here you can preview how this package release will appear once published to the main package index (which can be accomplished via the 'maintain' link below). Please note that once a package has been published to the main package index it cannot be undone! Please consult the package uploading documentation for more information.
Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF and other file formats used in population genetics analyses.
[Skip to Readme]
Properties
| Versions | 1.1.4.1, 1.1.4.1, 1.3.1, 1.3.2, 1.3.2.1, 1.3.3, 1.4.0, 1.4.0.1, 1.4.1, 1.5.0, 1.5.1, 1.5.1.1, 1.5.1.2, 1.5.1.3, 1.5.1.4, 1.5.2, 1.6.0, 1.6.1, 1.6.3, 1.6.6.0, 1.6.6.1, 1.6.7.0, 1.7.0, 1.7.1, 1.8.0.0, 1.8.0.1, 1.8.1.0, 1.8.1.1, 1.9.0.0, 1.10.0.0 |
|---|---|
| Change log | Changelog.md |
| Dependencies | attoparsec (>=0.13.2.2 && <0.14), base (>=4.7 && <5), bytestring (>=0.10.8.2 && <0.11), containers (>=0.5.10.2 && <0.6), data-memocombinators (>=0.5.1 && <0.6), errors (>=2.2.2 && <2.3), exceptions (>=0.8.3 && <0.9), foldl (>=1.3.7 && <1.4), hslogger (>=1.2.10 && <1.3), lens-family (>=1.2.2 && <1.3), MissingH (>=1.4.0.1 && <1.5), pipes (>=4.3.7 && <4.4), pipes-attoparsec (>=0.5.1.5 && <0.6), pipes-bytestring (>=2.1.6 && <2.2), pipes-safe (>=2.2.6 && <2.3), pipes-text (>=0.0.2.5 && <0.1), split (>=0.2.3.3 && <0.3), text (>=1.2.2.2 && <1.3), transformers (>=0.5.2.0 && <0.6), turtle (>=1.4.5 && <1.5), vector (>=0.12.0.1 && <0.13) [details] |
| License | GPL-3.0-only |
| Author | Stephan Schiffels |
| Maintainer | stephan.schiffels@mac.com |
| Category | Bioinformatics |
| Uploaded | by stephan_schiffels at 2019-03-05T14:02:50Z |
Modules
- SequenceFormats
- SequenceFormats.Eigenstrat
- SequenceFormats.Fasta
- SequenceFormats.FreqSum
- SequenceFormats.RareAlleleHistogram
- SequenceFormats.Utils
- SequenceFormats.VCF
Downloads
- sequence-formats-1.1.4.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
Package maintainers
For package maintainers and hackage trustees