diversity: Return the diversity at each position for all sequences in a fasta file

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Warnings:

Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.

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Versions 0.2.0.5, 0.2.0.5, 0.3.0.0, 0.3.4.0, 0.3.4.1, 0.3.5.0, 0.3.5.1, 0.4.0.0, 0.4.0.1, 0.4.0.2, 0.5.0.0, 0.5.0.2, 0.6.0.0, 0.6.0.1, 0.6.0.2, 0.6.2.0, 0.6.2.1, 0.6.3.0, 0.7.0.0, 0.7.0.1, 0.7.0.3, 0.7.1.0, 0.7.1.1, 0.8.0.0, 0.8.0.1, 0.8.0.2, 0.8.1.0
Change log None available
Dependencies base (>=4.6 && <4.8), containers (==0.5.*), diversity, fasta (>=0.5.1.2 && <0.6), math-functions (==0.1.*), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), split (==0.2.*) [details]
License GPL-2.0-only
Author Gregory W. Schwartz
Maintainer gregory.schwartz@drexel.edu
Category Bioinformatics
Home page https://github.com/GregorySchwartz/diversity
Uploaded by GregorySchwartz at 2014-12-09T18:40:03Z

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