classify-frog: Classify sounds produced by Xenopus laevis
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Warnings:
- 'ghc-options/ghc-prof-options: -fprof*' profiling flags are typically not appropriate for a distributed library package. These flags are useful to profile this package, but when profiling other packages that use this one these flags clutter the profile output with excessive detail. If you think other packages really want to see cost centres from this package then use '-fprof-auto-exported' which puts cost centres only on exported functions. Alternatively, if you want to use this, make it conditional based on a Cabal configuration flag (with 'manual: True' and 'default: False') and enable that flag during development.
This program is part of the Xenocall project. Researchers observed that the amount and duration of calls of the African clawed frog (Xenopus laevis) change when exposed to hormonal effective substances. The Xenocall project checks whether this effect can be used as an endpoint in animal tests instead of dissecting animals after the experiments.
An experiment for one substance may produce about 100 hours of audio recordings. It is a very tedious and error-prone work to examine this amount of data visually or by listening. The purpose of this program is to examine the recordings automatically and generate tables with basic statistical parameters.
Read the full report at http://code.henning-thielemann.de/classify-frog-doc/report.pdf.
Properties
| Versions | 0.2.3, 0.2.4.1, 0.2.4.2, 0.2.4.2, 0.2.4.3 |
|---|---|
| Change log | None available |
| Dependencies | array (>=0.4 && <0.6), audacity (>=0.0.1 && <0.1), base (>=4 && <5), bifunctors (>=5 && <6), Cabal (>=1.14 && <3), carray (>=0.1.5 && <0.2), comfort-array (>=0.4 && <0.5), concurrent-split (>=0.0 && <0.1), containers (>=0.4 && <0.7), deepseq (>=1.3 && <1.5), explicit-exception (>=0.1.8 && <0.2), fft (>=0.1.8 && <0.2), filemanip (>=0.3.6 && <0.4), gnuplot (>=0.5 && <0.6), hmm-lapack (>=0.4 && <0.5), lapack (>=0.3 && <0.4), lazy-csv (>=0.5 && <0.6), llvm-extra (>=0.6 && <0.8), llvm-tf (>=3.0 && <3.2), non-empty (>=0.3 && <0.4), numeric-prelude (>=0.4 && <0.5), optparse-applicative (>=0.11 && <0.15), parallel (>=3.2 && <3.3), pathtype (>=0.8 && <0.9), pooled-io (>=0.0.2 && <0.1), semigroups (>=0.8.4.1 && <1.0), soxlib (>=0.0 && <0.1), storable-record (>=0.0 && <0.1), storablevector (>=0.2.11 && <0.3), storablevector-carray (>=0.0 && <0.1), synthesizer-core (>=0.7.1 && <0.9), synthesizer-llvm (>=0.8 && <0.9), tagchup (>=0.4 && <0.5), text (>=1.1 && <1.3), time (>=1.5 && <1.9), transformers (>=0.2 && <0.6), utility-ht (>=0.0.12 && <0.1), xml-basic (>=0.1.1 && <0.2) [details] |
| License | BSD-3-Clause |
| Author | Henning Thielemann <haskell@henning-thielemann.de> |
| Maintainer | Henning Thielemann <haskell@henning-thielemann.de> |
| Category | Bioinformatics |
| Home page | http://code.haskell.org/~thielema/classify-frog/ |
| Source repo | this: darcs get http://hub.darcs.net/thielema/classify-frog --tag 0.2.4.2 head: darcs get http://hub.darcs.net/thielema/classify-frog |
| Uploaded | by HenningThielemann at 2019-05-25T07:24:25Z |
Flags
Automatic Flags
| Name | Description | Default |
|---|---|---|
| buildsketch | Enable some sketch programs | Disabled |
| llvm | Enable efficient signal processing using LLVM | Enabled |
Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info
Downloads
- classify-frog-0.2.4.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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