biohazard: bioinformatics support library
This is a package candidate release! Here you can preview how this package release will appear once published to the main package index (which can be accomplished via the 'maintain' link below). Please note that once a package has been published to the main package index it cannot be undone! Please consult the package uploading documentation for more information.
Warnings:
- From version 1.23 cabal supports specifiying explicit dependencies for Custom setup scripts. Consider using cabal-version >= 1.23 and adding a 'custom-setup' section with a 'setup-depends' field that specifies the dependencies of the Setup.hs script itself. The 'setup-depends' field uses the same syntax as 'build-depends', so a simple example would be 'setup-depends: base, Cabal'.
- Exposed modules use unallocated top-level names: Bio
This is a collection of modules I separated from various bioinformatics tools. The hope is to make them reusable and easier to maintain. Also includes some of these tools and a bunch that work on mitochondrial sequences.
Properties
| Versions | 0.6.1, 0.6.2, 0.6.3, 0.6.5, 0.6.6, 0.6.6, 0.6.6.1, 0.6.9, 0.6.10, 0.6.13, 0.6.15, 0.6.16, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.1.0, 1.1.1, 2.0, 2.1 |
|---|---|
| Change log | None available |
| Dependencies | aeson (>=0.7 && <0.9), async (>=2.0 && <2.1), attoparsec (>=0.10 && <0.13), base (>=4.5 && <4.10), binary (>=0.7 && <0.9), biohazard, bytestring (>=0.10.2 && <0.11), bytestring-mmap (>=0.2 && <1.0), containers (>=0.4.1 && <0.6), deepseq (>=1.3 && <1.5), directory (>=1.2 && <2.0), exceptions (>=0.6 && <0.9), filepath (>=1.3 && <2.0), hashable (>=1.0 && <1.3), hmatrix (>=0.16 && <0.17), iteratee (>=0.8.9.6 && <0.8.10), ListLike (>=3.0 && <5.0), nonlinear-optimization (>=0.3 && <0.4), primitive (>=0.5 && <0.7), random (>=1.0 && <1.2), scientific (>=0.3 && <0.4), stm (>=2.4 && <2.5), strict (>=0.3 && <0.4), template-haskell (>=2 && <3), text (>=1.0 && <2.0), transformers (>=0.3 && <0.6), unix (>=2.5 && <2.8), unordered-containers (>=0.2.3 && <0.3), Vec (>=1 && <2), vector (>=0.9 && <0.11), vector-algorithms (>=0.3 && <1.0), vector-th-unbox (>=0.2 && <0.3), zlib (>=0.5 && <0.7) [details] |
| License | BSD-3-Clause |
| Copyright | (C) 2010-2016 Udo Stenzel |
| Author | Udo Stenzel |
| Maintainer | udo.stenzel@eva.mpg.de |
| Category | Bioinformatics |
| Home page | http://github.com/udo-stenzel/biohazard |
| Source repo | head: git clone https://bitbucket.org/ustenzel/biohazard.git this: git clone https://bitbucket.org/ustenzel/biohazard.git(tag 0.6.6) |
| Uploaded | by ustenzel at 2016-05-31T19:46:11Z |
Modules
- Bio
- Bio.Adna
- Bio.Align
- Bio.Bam
- Bio.Bam.Evan
- Bio.Bam.Fastq
- Bio.Bam.Filter
- Bio.Bam.Header
- Bio.Bam.Index
- Bio.Bam.Pileup
- Bio.Bam.Reader
- Bio.Bam.Rec
- Bio.Bam.Regions
- Bio.Bam.Rmdup
- Bio.Bam.Trim
- Bio.Bam.Writer
- Bio.Base
- Bio.Genocall
- Bio.Genocall.AvroFile
- Bio.Genocall.Metadata
- Bio.Iteratee
- Bio.Iteratee.Bgzf
- Bio.Iteratee.Builder
- Bio.Iteratee.ZLib
- Bio.PriorityQueue
- Bio.TwoBit
- Util
- Bio.Util.AD
- Bio.Util.AD2
- Bio.Util.Numeric
- Bio.Util.Regex
- Data
- Data.Avro
- Data.MiniFloat
Downloads
- biohazard-0.6.6.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
Package maintainers
For package maintainers and hackage trustees