Index - S
| Sample | |
| 1 (Type/Class) | Bio.Genocall.Metadata |
| 2 (Data Constructor) | Bio.Genocall.Metadata |
| sample_avro_files | Bio.Genocall.Metadata |
| sample_bcf_files | Bio.Genocall.Metadata |
| sample_divergences | Bio.Genocall.Metadata |
| sample_div_tables | Bio.Genocall.Metadata |
| sample_libraries | Bio.Genocall.Metadata |
| Seek | Bio.Bam.Pileup |
| seek | Bio.Iteratee, Bio.Bam |
| SeekException | |
| 1 (Data Constructor) | Bio.Iteratee, Bio.Bam |
| 2 (Type/Class) | Bio.Iteratee, Bio.Bam |
| Seqid | Bio.Base, Bio.TwoBit |
| setEOF | Bio.Iteratee, Bio.Bam |
| setMark | Bio.Iteratee.Builder |
| setQualFlag | Bio.Bam.Rec, Bio.Bam |
| set_pos | Bio.Bam.Pileup |
| set_waiting | Bio.Bam.Pileup |
| shiftPosition | Bio.Base, Bio.TwoBit |
| shiftRange | Bio.Base, Bio.TwoBit |
| showAligned | Bio.Align |
| showBamMeta | Bio.Bam.Header, Bio.Bam |
| showMd | Bio.Bam.Header, Bio.Bam |
| showNucleotide | Bio.Base, Bio.TwoBit |
| showNucleotides | Bio.Base, Bio.TwoBit |
| showNum | Bio.Util.Numeric |
| showOOM | Bio.Util.Numeric |
| sigmoid2 | Bio.Util.Numeric |
| Simple | Bio.Util.AD |
| simple_call | Bio.Genocall |
| simple_indel_call | Bio.Genocall |
| simple_snp_call | Bio.Genocall |
| Sizeable | Bio.PriorityQueue |
| sizePQ | Bio.PriorityQueue |
| skipToEof | Bio.Iteratee, Bio.Bam |
| SMa | Bio.Bam.Rec, Bio.Bam |
| Snp_GLs | |
| 1 (Type/Class) | Bio.Genocall |
| 2 (Data Constructor) | Bio.Genocall |
| snp_gls | Bio.Genocall |
| snp_likelihoods | Bio.Genocall.AvroFile |
| snp_stats | Bio.Genocall.AvroFile |
| Soft | Bio.TwoBit |
| SpecialChunk | Bio.Iteratee.Bgzf |
| split_sam_rgns | Bio.Genocall.Metadata |
| sq_length | Bio.Bam.Header, Bio.Bam |
| sq_name | Bio.Bam.Header, Bio.Bam |
| sq_other_shit | Bio.Bam.Header, Bio.Bam |
| ssd_delta | Bio.Genocall.Adna |
| ssd_kappa | Bio.Genocall.Adna |
| ssd_lambda | Bio.Genocall.Adna |
| ssd_sigma | Bio.Genocall.Adna |
| start | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| StartFunctionValueNaN | Bio.Util.AD |
| start_position | Bio.Genocall.AvroFile |
| Statistics | |
| 1 (Data Constructor) | Bio.Util.AD |
| 2 (Type/Class) | Bio.Util.AD |
| stderr | Bio.Iteratee, Bio.Bam |
| stdin | Bio.Iteratee, Bio.Bam |
| stdout | Bio.Iteratee, Bio.Bam |
| StopRules | Bio.Util.AD |
| stopRules | Bio.Util.AD |
| Stream | Bio.Iteratee, Bio.Bam |
| stream2vector | Bio.Iteratee, Bio.Bam |
| stream2vectorN | Bio.Iteratee, Bio.Bam |
| StreamError | Bio.Iteratee.ZLib |
| StreamStatus | Bio.Iteratee, Bio.Bam |
| subsampleBam | Bio.Bam.Index, Bio.Bam |
| Subsequence | |
| 1 (Type/Class) | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| Sum | |
| 1 (Data Constructor) | Bio.Base, Bio.TwoBit |
| 2 (Type/Class) | Bio.Base, Bio.TwoBit |
| sum_mapq | Bio.Bam.Pileup |
| sum_mapq_squared | Bio.Bam.Pileup |