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Description | |||||||||
Functionality for manipulating KEGG annotations. KEGG is a bit hard find, but there exist species-specific tables Available organisms are listed in the table at ftp://ftp.genome.jp/pub/kegg/genes/etc/all_species.tab Data for each organism is stored its own subdirectory under ftp://ftp.genome.jp/pub/kegg/genes/organisms/ Containing tables linking everything -- including external resources like UniProt, PDB, or NCBI -- together. | |||||||||
Synopsis | |||||||||
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Documentation | |||||||||
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Most KEGG files that contain associations, have one association per line, consisting of two items separated by whitespace. This is a generalized reader function. | |||||||||
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Convert UniProt IDs (up:xxxxxx) to the UniProtAcc type. | |||||||||
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Convert KO IDs (ko:xxxxx) to the KO data type. | |||||||||
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KEGG uses strings with an identifying prefix for IDs. This helper function checks and removes prefix to construct native values. | |||||||||
Produced by Haddock version 2.6.1 |