Index
| alignmentConsensusDotBracket | Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| alignmentConsensusEnergyCovarianceContributions | Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| alignmentConsensusInitialMinimumFreeEnergy | Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| alignmentConsensusMinimumFreeEnergy | Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| alignmentConsensusSequence | Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| backgroundModel | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| centroidDistance | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| centroidFoldingEnergy | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| centroidStructure | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| coarseFoldingEnergy | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| coarseStructure | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| coFoldingEnergy | Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| coFoldSecondaryStructure1 | Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| coFoldSecondaryStructure2 | Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| coFoldSequence1 | Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| coFoldSequence2 | Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| columnNumber | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| combinationsPair | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| consensusDotBracket | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| consensusMinimumFreeEnergy | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| consensusSequence | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| covarianceContribution | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| decisionModel | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| dotBracket | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| duplexEnergy | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| duplexEnergyWithoutAccessiblity | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| end | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| energyContribution | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| ensembleDiversity | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| foldingEnergy | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| foldSecondaryStructure | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| foldSequence | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| frame | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| from | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| gcContent | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| header | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| hitLength | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| hss | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| meaDistance | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| meaFoldingEnergy | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| meaFoldSequence | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| meanPairwiseIdentity | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| meanSingleSequenceMinimumFreeEnergy | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| meanZScore | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| meaSequenceIdentifier | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| meaStructure | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| mfefoldingEnergy | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| mfeFreq | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| mfeStructure | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| minimumFreeEnergy | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| name | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| parseNucleotideAlignmentEntry | Bio.ViennaRNAParserLibrary |
| parseNucleotideSequence | Bio.ViennaRNAParserLibrary |
| parseProteinAlignmentEntry | Bio.ViennaRNAParserLibrary |
| parseProteinSequence | Bio.ViennaRNAParserLibrary |
| parseRNAalifold | Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| parseRNAcode | Bio.RNAcodeParser, Bio.ViennaRNAParser |
| parseRNAcodeTabular | Bio.RNAcodeParser, Bio.ViennaRNAParser |
| parseRNAcofold | Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| parseRNAdistance | Bio.RNAdistanceParser, Bio.ViennaRNAParser |
| parseRNAfold | Bio.RNAfoldParser, Bio.ViennaRNAParser |
| parseRNAMEAfold | Bio.RNAfoldParser, Bio.ViennaRNAParser |
| parseRNAplex | Bio.RNAplexParser, Bio.ViennaRNAParser |
| parseRNAup | Bio.RNAupParser, Bio.ViennaRNAParser |
| parseRNAz | Bio.RNAzParser, Bio.ViennaRNAParser |
| plexSecondaryStructure | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| prediction | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| prefilterEnergy | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| prefilterStart | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| prefilterStop | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| pvalue | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| queryAccessiblity | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| queryDuplexBegin | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| queryDuplexEnd | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| queryIdentifier | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| rcAlignmentNumber | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| rcBigOmega | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| rcDelta | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| rcSampleNumber | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| rcSmallOmega | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| rcStopPenalty | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| rcTime | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| readDouble | Bio.ViennaRNAParserLibrary |
| readingDirection | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| readInt | Bio.ViennaRNAParserLibrary |
| readRNAalifold | Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| readRNAcode | Bio.RNAcodeParser, Bio.ViennaRNAParser |
| readRNAcodeTabular | Bio.RNAcodeParser, Bio.ViennaRNAParser |
| readRNAcofold | Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| readRNAdistance | Bio.RNAdistanceParser, Bio.ViennaRNAParser |
| readRNAfold | Bio.RNAfoldParser, Bio.ViennaRNAParser |
| readRNAMEAfold | Bio.RNAfoldParser, Bio.ViennaRNAParser |
| readRNAplex | Bio.RNAplexParser, Bio.ViennaRNAParser |
| readRNAup | Bio.RNAupParser, Bio.ViennaRNAParser |
| readRNAz | Bio.RNAzParser, Bio.ViennaRNAParser |
| resultSequence | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| RNAalifold | |
| 1 (Type/Class) | Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAalifoldData, Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| RNAcode | |
| 1 (Type/Class) | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| RNAcodeHit | |
| 1 (Type/Class) | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| rnacodeHits | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| RNAcofold | |
| 1 (Type/Class) | Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAcofoldData, Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| RNAdistance | |
| 1 (Type/Class) | Bio.RNAdistanceData, Bio.RNAdistanceParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAdistanceData, Bio.RNAdistanceParser, Bio.ViennaRNAParser |
| RNAfold | |
| 1 (Type/Class) | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| RNAfoldMEA | |
| 1 (Type/Class) | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| RNAplexInteraction | |
| 1 (Type/Class) | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| RNAupInteraction | |
| 1 (Type/Class) | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| RNAupInteractionRegion | |
| 1 (Type/Class) | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| RNAz | |
| 1 (Type/Class) | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| RNAzConsensus | |
| 1 (Type/Class) | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| rnazConsensus | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| RNAzResult | |
| 1 (Type/Class) | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| 2 (Data Constructor) | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| rnazResults | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| score | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| secondaryStructureDistance | Bio.RNAdistanceData, Bio.RNAdistanceParser, Bio.ViennaRNAParser |
| sequenceIdentifier | Bio.RNAfoldData, Bio.RNAfoldParser, Bio.ViennaRNAParser |
| sequenceNumber | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| shannonEntropy | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| start | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| strand | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| structureConservationIndex | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| svmDecisionValue | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| svmRNAClassProbability | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| systemRNAalifold | Bio.RNAalifoldParser, Bio.ViennaRNAParser |
| systemRNAcode | Bio.RNAcodeParser, Bio.ViennaRNAParser |
| systemRNAcofold | Bio.RNAcofoldParser, Bio.ViennaRNAParser |
| systemRNAfold | Bio.RNAfoldParser, Bio.ViennaRNAParser |
| systemRNAfoldOptions | Bio.RNAfoldParser, Bio.ViennaRNAParser |
| systemRNAz | Bio.RNAzParser, Bio.ViennaRNAParser |
| targetAccessibility | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| targetDuplexBegin | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| targetDuplexEnd | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| targetIdentifier | Bio.RNAplexData, Bio.RNAplexParser, Bio.ViennaRNAParser |
| to | Bio.RNAcodeData, Bio.RNAcodeParser, Bio.ViennaRNAParser |
| upDuplexEnergy | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upDuplexEnergyWithoutAccessiblity | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upInteractions | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upOutputFileName | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upQueryAccessiblity | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upQueryDuplexBegin | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upQueryDuplexEnd | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upQueryIdentifier | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upQuerySequence | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upSecondaryStructure | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upTargetAccessibility | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upTargetDuplexBegin | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upTargetDuplexEnd | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upTargetIdentifier | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| upTargetSequence | Bio.RNAupData, Bio.RNAupParser, Bio.ViennaRNAParser |
| version | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| zScore | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |
| zscoreCalculationApproach | Bio.RNAzData, Bio.RNAzParser, Bio.ViennaRNAParser |