RNAlien: Unsupervized construction of RNA family models
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Warnings:
- 'ghc-options: -O2' is rarely needed. Check that it is giving a real benefit and not just imposing longer compile times on your users.
- Exposed modules use unallocated top-level names: Bio
RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.
It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.
The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3):
TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):
For instruction how to use RNAlien please see the Help page.
Dependencies:
Installation via cabal-install:
cabal install RNAlien
Properties
| Versions | 1.0.0, 1.1.0, 1.1.1, 1.1.3, 1.2.4, 1.2.5, 1.2.6, 1.2.8, 1.2.9, 1.3.0, 1.3.1, 1.3.1, 1.3.7, 1.6.0, 1.7.0 |
|---|---|
| Change log | None available |
| Dependencies | aeson, base (>=4.5 && <5), biocore, biofasta, BlastHTTP (>=1.2.1), blastxml (>=0.3.2), bytestring, cassava, ClustalParser (>=1.2.1), cmdargs, containers, directory, edit-distance, either-unwrap, EntrezHTTP (>=1.0.3), filepath, hierarchical-clustering, HTTP, http-conduit, http-types, hxt, matrix, network, parsec, process, pureMD5, random, RNAlien, split, Taxonomy (>=1.0.2), text, text-metrics, time, transformers, vector, ViennaRNAParser (>=1.3.2) [details] |
| License | GPL-3.0-only |
| Author | Florian Eggenhofer |
| Maintainer | egg@tbi.univie.ac.at |
| Category | Bioinformatics |
| Source repo | head: git clone https://github.com/eggzilla/RNAlien this: git clone https://github.com/eggzilla/RNAlien/tree/1.3.1(tag 1.3.1) |
| Uploaded | by FlorianEggenhofer at 2017-02-06T20:37:11Z |
Modules
- Bio
- Bio.InfernalParser
- Bio.RNAcentralHTTP
- Bio.RNAlienData
- Bio.RNAlienLibrary
Downloads
- RNAlien-1.3.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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