PrimitiveArray: Efficient multidimensional arrays

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Warnings:

'ghc-options: -O2' is rarely needed. Check that it is giving a real benefit and not just imposing longer compile times on your users.

generalized Algebraic Dynamic Programming

This library provides efficient multidimensional arrays. Import Data.PrimitiveArray for indices, lenses, and arrays.

For generalized ADP users, the library also provides the machinary to fill tables in the correct order required by usual CYK-style parsers, or regular grammars (used e.g. in alignment algorithms). This means that unless your grammar requires a strange order in which parsing is to be performed, it will mostly "just work".

In general operations do not perform bounds-checking or other sanity-checking and are aimed towards efficiency as much as possible. Users (like ADPfusion) should perform their own bounds-checking, outside of code that performs "loop-like" operations.

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Properties

Versions	0.0.2.1, 0.0.2.2, 0.0.3.0, 0.0.3.1, 0.0.4.0, 0.1.1.2, 0.2.0.0, 0.2.1.0, 0.2.1.1, 0.2.2.0, 0.3.0.0, 0.4.0.0, 0.4.0.1, 0.5.0.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.6.0.0, 0.6.1.0, 0.7.0.0, 0.7.0.1, 0.7.1.0, 0.8.0.0, 0.8.0.1, 0.9.0.0, 0.9.1.0, 0.9.1.1, 0.10.0.0, 0.10.1.0, 0.10.1.0, 0.10.1.1
Change log	changelog.md
Dependencies	aeson (>=0.8), base (>=4.7 && <5.0), binary (>=0.7), bits (>=0.4), cereal (>=0.4), cereal-vector (>=0.2), containers, deepseq (>=1.3), DPutils (>=0.1.0 && <0.1.1), hashable (>=1.2), hashtables (>=1.2), lens (>=4.0), log-domain (>=0.10), mtl (>=2.0), OrderedBits (>=0.0.2 && <0.0.3), primitive (>=0.5.4), QuickCheck (>=2.7), smallcheck (>=1.1), text (>=1.0), unordered-containers (>=0.2), vector (>=0.11), vector-algorithms (>=0.8), vector-binary-instances (>=0.2), vector-th-unbox (>=0.2) [details]
License	BSD-3-Clause
Copyright	Christian Hoener zu Siederdissen, 2011-2021
Author	Christian Hoener zu Siederdissen, 2011-2021
Maintainer	choener@bioinf.uni-leipzig.de
Category	Data
Home page	https://github.com/choener/PrimitiveArray
Bug tracker	https://github.com/choener/PrimitiveArray/issues
Source repo	head: git clone git://github.com/choener/PrimitiveArray
Uploaded	by ChristianHoener at 2021-05-31T09:46:23Z

Modules

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Data
- Data.PrimitiveArray

Flags

Manual Flags

Name	Description	Default
debug	Enable bounds checking and various other debug operations at the cost of a significant performance penalty.	Disabled
debugoutput	Enable debug output, which spams the screen full of index information	Disabled
llvm	use llvm	Disabled
debugdump	Enable dumping intermediate / core files	Disabled
dump-core	Dump HTML for the core generated by GHC during compilation	Disabled

Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info

Downloads

PrimitiveArray-0.10.1.0.tar.gz [browse] (Cabal source package)
Package description (as included in the package)

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Package maintainers

ChristianHoener

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Readme for PrimitiveArray-0.10.1.0

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PrimitiveArray

generalized Algebraic Dynamic Programming Homepage

PrimitiveArray provides operations on multi-dimensional arrays. Internally, the representation is based on the vector library, while the multi-dimensional indexing follows repa.

Primitive arrays are designed to be used together with ADPfusion.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/