Build #6 for BlastHTTP-1.0.0
| Package | BlastHTTP-1.0.0 |
|---|
| Install | BuildFailed |
|---|---|
| Docs | NotTried |
| Tests | NotTried |
| Time submitted | 2016-12-18 04:48:21.241511 UTC |
|---|---|
| Compiler | ghc-8.0.1.20161018 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | HTTP-4000.3.3, base-4.9.0.0, biocore-0.3.1, blastxml-0.3.2, bytestring-0.10.8.1, conduit-1.2.8, http-conduit-2.2.3, hxt-9.3.1.16, mtl-2.2.1, network-2.6.3.1, transformers-0.5.2.0 |
| Flags | none |
Code Coverage
No Code Coverage was submitted for this report.
Build log
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Resolving dependencies...
Configuring base64-bytestring-1.0.0.1...
Configuring base-compat-0.9.1...
Building base64-bytestring-1.0.0.1...
Building base-compat-0.9.1...
Configuring byteable-0.1.1...
Installed base64-bytestring-1.0.0.1
Building byteable-0.1.1...
Configuring data-default-class-0.1.2.0...
Installed base-compat-0.9.1
Building data-default-class-0.1.2.0...
Configuring dlist-0.8.0.2...
Installed byteable-0.1.1
Building dlist-0.8.0.2...
Configuring cereal-0.5.4.0...
Installed data-default-class-0.1.2.0
Building cereal-0.5.4.0...
Configuring foundation-0.0.2...
Installed dlist-0.8.0.2
Building foundation-0.0.2...
Configuring hourglass-0.2.10...
Installed cereal-0.5.4.0
Building hourglass-0.2.10...
Configuring mtl-2.2.1...
Installed hourglass-0.2.10
Building mtl-2.2.1...
Configuring hxt-charproperties-9.2.0.1...
Installed mtl-2.2.1
Building hxt-charproperties-9.2.0.1...
Configuring old-locale-1.0.0.7...
Installed hxt-charproperties-9.2.0.1
Building old-locale-1.0.0.7...
Configuring parallel-3.2.1.0...
Installed old-locale-1.0.0.7
Building parallel-3.2.1.0...
Configuring network-2.6.3.1...
Installed parallel-3.2.1.0
Building network-2.6.3.1...
Configuring primitive-0.6.1.0...
Installed foundation-0.0.2
Building primitive-0.6.1.0...
Configuring random-1.1...
Installed primitive-0.6.1.0
Building random-1.1...
Configuring stm-2.4.4.1...
Installed network-2.6.3.1
Building stm-2.4.4.1...
Configuring time-locale-compat-0.1.1.3...
Installed random-1.1
Building time-locale-compat-0.1.1.3...
Configuring transformers-compat-0.5.1.4...
Installed stm-2.4.4.1
Configuring text-1.2.2.1...
Installed time-locale-compat-0.1.1.3
Building transformers-compat-0.5.1.4...
Building text-1.2.2.1...
Configuring zlib-0.6.1.2...
Installed transformers-compat-0.5.1.4
Building zlib-0.6.1.2...
Installed zlib-0.6.1.2
Configuring pem-0.2.2...
Building pem-0.2.2...
Configuring hxt-unicode-9.0.2.4...
Installed pem-0.2.2
Building hxt-unicode-9.0.2.4...
Configuring memory-0.14...
Installed hxt-unicode-9.0.2.4
Building memory-0.14...
Configuring socks-0.5.5...
Installed text-1.2.2.1
Building socks-0.5.5...
Configuring vector-0.11.0.0...
Installed memory-0.14
Configuring async-2.1.1...
Installed socks-0.5.5
Building vector-0.11.0.0...
Building async-2.1.1...
Configuring tagged-0.8.5...
Installed async-2.1.1
Building tagged-0.8.5...
Configuring transformers-base-0.4.4...
Installed tagged-0.8.5
Building transformers-base-0.4.4...
Configuring mmorph-1.0.9...
Installed transformers-base-0.4.4
Building mmorph-1.0.9...
Configuring exceptions-0.8.3...
Installed mmorph-1.0.9
Building exceptions-0.8.3...
Installed exceptions-0.8.3
Configuring mime-types-0.1.0.7...
Building mime-types-0.1.0.7...
Configuring blaze-builder-0.4.0.2...
Installed mime-types-0.1.0.7
Building blaze-builder-0.4.0.2...
Configuring hashable-1.2.4.0...
Installed vector-0.11.0.0
Building hashable-1.2.4.0...
Configuring parsec-3.1.11...
Installed blaze-builder-0.4.0.2
Building parsec-3.1.11...
Configuring system-filepath-0.4.13.4...
Installed hashable-1.2.4.0
Building system-filepath-0.4.13.4...
Configuring tagsoup-0.14...
Installed parsec-3.1.11
Building tagsoup-0.14...
Configuring asn1-types-0.3.2...
Installed system-filepath-0.4.13.4
Building asn1-types-0.3.2...
Configuring monad-control-1.0.1.0...
Installed asn1-types-0.3.2
Building monad-control-1.0.1.0...
Configuring cryptonite-0.21...
Installed monad-control-1.0.1.0
Building cryptonite-0.21...
Installed tagsoup-0.14
Configuring cookie-0.4.2.1...
Building cookie-0.4.2.1...
Configuring case-insensitive-1.2.0.7...
Installed cookie-0.4.2.1
Building case-insensitive-1.2.0.7...
Configuring streaming-commons-0.1.16...
Installed case-insensitive-1.2.0.7
Building streaming-commons-0.1.16...
Configuring scientific-0.3.4.9...
Installed streaming-commons-0.1.16
Building scientific-0.3.4.9...
Configuring unordered-containers-0.2.7.1...
Installed scientific-0.3.4.9
Building unordered-containers-0.2.7.1...
Configuring network-uri-2.6.1.0...
Installed unordered-containers-0.2.7.1
Building network-uri-2.6.1.0...
Configuring asn1-encoding-0.9.4...
Installed network-uri-2.6.1.0
Building asn1-encoding-0.9.4...
Configuring stringable-0.1.3...
Installed cryptonite-0.21
Building stringable-0.1.3...
Configuring hxt-regex-xmlschema-9.2.0.3...
Installed asn1-encoding-0.9.4
Configuring lifted-base-0.2.3.8...
Installed stringable-0.1.3
Building hxt-regex-xmlschema-9.2.0.3...
Building lifted-base-0.2.3.8...
Installed lifted-base-0.2.3.8
Configuring http-types-0.9.1...
Building http-types-0.9.1...
Configuring HTTP-4000.3.3...
Installed hxt-regex-xmlschema-9.2.0.3
Building HTTP-4000.3.3...
Configuring attoparsec-0.13.1.0...
Installed http-types-0.9.1
Building attoparsec-0.13.1.0...
Configuring asn1-parse-0.9.4...
Installed HTTP-4000.3.3
Building asn1-parse-0.9.4...
Configuring biocore-0.3.1...
Installed attoparsec-0.13.1.0
Configuring resourcet-1.1.8.1...
Installed asn1-parse-0.9.4
Building biocore-0.3.1...
Building resourcet-1.1.8.1...
Installed biocore-0.3.1
Configuring http-client-0.5.4...
Building http-client-0.5.4...
Configuring hxt-9.3.1.16...
Installed resourcet-1.1.8.1
Building hxt-9.3.1.16...
Configuring x509-1.6.5...
Installed http-client-0.5.4
Building x509-1.6.5...
Configuring aeson-1.0.2.1...
Installed x509-1.6.5
Building aeson-1.0.2.1...
Configuring blastxml-0.3.2...
Installed hxt-9.3.1.16
Building blastxml-0.3.2...
Installed blastxml-0.3.2
Configuring x509-store-1.6.2...
Configuring conduit-1.2.8...
Installed aeson-1.0.2.1
Building x509-store-1.6.2...
Building conduit-1.2.8...
Installed x509-store-1.6.2
Configuring x509-validation-1.6.5...
Building x509-validation-1.6.5...
Configuring x509-system-1.6.4...
Installed x509-validation-1.6.5
Building x509-system-1.6.4...
Installed conduit-1.2.8
Configuring tls-1.3.9...
Configuring conduit-extra-1.1.15...
Installed x509-system-1.6.4
Building tls-1.3.9...
Building conduit-extra-1.1.15...
Installed conduit-extra-1.1.15
Installed tls-1.3.9
Configuring connection-0.2.6...
Building connection-0.2.6...
Installed connection-0.2.6
Configuring http-client-tls-0.3.3...
Building http-client-tls-0.3.3...
Installed http-client-tls-0.3.3
Configuring http-conduit-2.2.3...
Building http-conduit-2.2.3...
Installed http-conduit-2.2.3
Downloading BlastHTTP-1.0.0...
Configuring BlastHTTP-1.0.0...
Building BlastHTTP-1.0.0...
Failed to install BlastHTTP-1.0.0
Build log ( /home/builder/.cabal/logs/BlastHTTP-1.0.0.log ):
cabal: Entering directory '/tmp/cabal-tmp-1134/BlastHTTP-1.0.0'
Configuring BlastHTTP-1.0.0...
Building BlastHTTP-1.0.0...
Preprocessing library BlastHTTP-1.0.0...
[1 of 1] Compiling Bio.BlastHTTP ( src/Bio/BlastHTTP.hs, dist/build/Bio/BlastHTTP.o )
src/Bio/BlastHTTP.hs:126:63: error:
Variable not in scope: entrezQuery :: Maybe String
src/Bio/BlastHTTP.hs:126:75: error:
• Couldn't match expected type ‘Int’
with actual type ‘Maybe String’
• In the fifth argument of ‘performQuery’, namely
‘optionalArguments’
In a stmt of a 'do' block:
performQuery
selectedProgram
selectedDatabase
querySequence
entrezQuery
optionalArguments
In the expression:
do { let counter = 1;
let defaultProgram = "blastn";
let defaultDatabase = "refseq_genomic";
let selectedProgram = fromMaybe defaultProgram program;
.... }
cabal: Leaving directory '/tmp/cabal-tmp-1134/BlastHTTP-1.0.0'
cabal: Error: some packages failed to install:
BlastHTTP-1.0.0 failed during the building phase. The exception was:
ExitFailure 1
Test log
No test log was submitted for this report.