| Safe Haskell | None |
|---|---|
| Language | Haskell2010 |
Bio.SeqLoc.OnSeq
Contents
Description
Data types for sequence locations and sequence positions associated with specific, named sequences.
- newtype SeqLabel :: * = SeqLabel {
- unSL :: ByteString
- toSeqLabel :: ByteString -> SeqLabel
- unSeqLabel :: SeqLabel -> ByteString
- data OnSeq s = OnSeq {
- onSeqLabel :: !SeqLabel
- unOnSeq :: !s
- type SeqOffset = OnSeq Offset
- type SeqPos = OnSeq Pos
- type ContigSeqLoc = OnSeq ContigLoc
- type SpliceSeqLoc = OnSeq SpliceLoc
- andSameSeq :: (a -> b -> Bool) -> OnSeq a -> OnSeq b -> Bool
Documentation
newtype SeqLabel :: *
Sequence data are lazy bytestrings of ASCII characters.
Constructors
| SeqLabel | |
Fields
| |
toSeqLabel :: ByteString -> SeqLabel Source
unSeqLabel :: SeqLabel -> ByteString Source
Constructors
| OnSeq | |
Fields
| |
Positions on named sequences
Contiguous location spans on named sequences
type ContigSeqLoc = OnSeq ContigLoc Source
A location consisting of a contiguous span of positions on a named sequence.
Arbitrary location spans on named sequences
type SpliceSeqLoc = OnSeq SpliceLoc Source
A general location, consisting of spans of sequence positions on a specific, named sequence.