heatitup-complete: Find and annotate ITDs with assembly or read pair joining.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.


[Last Documentation]

  • Blast
  • Merge
  • Parse
  • Types
  • Utility


Maintainer's Corner

Package maintainers

For package maintainers and hackage trustees


  • No Candidates
Versions [RSS],,,
Dependencies base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details]
License GPL-3.0-only
Copyright Copyright: (c) 2019 Gregory W. Schwartz
Author Gregory W. Schwartz
Maintainer gsch@pennmedicine.upenn.edu
Category Bioinformatics
Home page http://github.com/GregorySchwartz/heatitup-complete#readme
Source repo head: git clone https://github.com/GregorySchwartz/heatitup-complete
Uploaded by GregorySchwartz at 2020-02-17T15:59:17Z
Executables heatitup-complete
Downloads 1563 total (18 in the last 30 days)
Rating (no votes yet) [estimated by Bayesian average]
Your Rating
  • λ
  • λ
  • λ
Status Docs not available [build log]
All reported builds failed as of 2020-02-17 [all 3 reports]