heatitup-complete: Find and annotate ITDs with assembly or read pair joining.
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
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- heatitup-complete-0.5.5.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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| Versions [RSS] | 0.5.3.3, 0.5.4.0, 0.5.4.1, 0.5.5.0 |
|---|---|
| Dependencies | base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details] |
| License | GPL-3.0-only |
| Copyright | Copyright: (c) 2019 Gregory W. Schwartz |
| Author | Gregory W. Schwartz |
| Maintainer | gsch@pennmedicine.upenn.edu |
| Category | Bioinformatics |
| Home page | http://github.com/GregorySchwartz/heatitup-complete#readme |
| Source repo | head: git clone https://github.com/GregorySchwartz/heatitup-complete |
| Uploaded | by GregorySchwartz at 2020-02-17T15:59:17Z |
| Distributions | |
| Executables | heatitup-complete |
| Downloads | 1536 total (20 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs not available [build log] All reported builds failed as of 2020-02-17 [all 3 reports] |