BiobaseInfernal: Infernal data structures and tools
Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.
The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.
The cmsearchFilter
program provides filtering and coloring
options.
[Skip to Readme]
Modules
- Biobase
- SElab
- Biobase.SElab.CM
- Biobase.SElab.CM.Import
- Biobase.SElab.CM.ModelStructure
- Biobase.SElab.CM.Types
- Common
- Biobase.SElab.Common.Parser
- Biobase.SElab.HMM
- Biobase.SElab.HMM.Import
- Biobase.SElab.HMM.Types
- Biobase.SElab.Model
- Biobase.SElab.Model.Import
- Biobase.SElab.Model.Types
- Biobase.SElab.Taxonomy
- Biobase.SElab.Taxonomy.Import
- Biobase.SElab.CM
- SElab
Downloads
- BiobaseInfernal-0.8.1.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
Versions [RSS] | 0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0, 0.8.1.0 |
---|---|
Change log | changelog.md |
Dependencies | aeson (>=0.9), attoparsec (>=0.12), base (>=4.7 && <5.0), binary (>=0.7), BiobaseInfernal, BiobaseTypes (>=0.1.2 && <0.1.3), BiobaseXNA (>=0.9.3 && <0.9.4), bytestring, cereal (>=0.4), cereal-text (>=0.1), cereal-vector (>=0.2), cmdargs (>=0.10), containers, data-default (>=0.5), deepseq (>=1.4), DPutils (>=0.0.1 && <0.0.2), filepath (>=1.3), hashable (>=1.2), lens (>=4.0), parallel (>=3.0), pipes (>=4.0), pipes-attoparsec (>=0.5), pipes-bytestring (>=2.0), pipes-parse (>=3.0), pipes-safe (>=2.2), pipes-zlib (>=0.4), primitive (>=0.5), PrimitiveArray (>=0.8.0 && <0.8.1), strict (>=0.3), string-conversions (>=0.4), text (>=1.0), text-binary (>=0.1), transformers, tuple (>=0.3), unordered-containers (>=0.2), utf8-string (>=1.0), vector (>=0.10), vector-th-unbox (>=0.2), zlib (>=0.6) [details] |
License | GPL-3.0-only |
Copyright | Christian Hoener zu Siederdissen, 2011 - 2017 |
Author | Christian Hoener zu Siederdissen |
Maintainer | choener@bioinf.uni-leipzig.de |
Category | Bioinformatics |
Home page | https://github.com/choener/BiobaseInfernal |
Bug tracker | https://github.com/choener/BiobaseInfernal/issues |
Source repo | head: git clone git://github.com/choener/BiobaseInfernal |
Uploaded | by ChristianHoener at 2017-03-14T13:57:23Z |
Distributions | |
Reverse Dependencies | 3 direct, 0 indirect [details] |
Executables | cmsearchFilter |
Downloads | 15955 total (35 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs not available [build log] Last success reported on 2017-03-14 [all 2 reports] |