BiobaseBlast: BLAST-related tools

This library contains BLAST-related functionality:

Parser for tabular NCBI BLAST+ output
Parser for JSON2 NCBI BLAST+ output
Parsers for BLOSUM and PAM matrices.
Specialized substitution functions for (in)complete amino acid / nucleotide triplet substitution.
Incomplete nucleotide patterns map one or two nucleotides to an amino acid (need for indel editing in the mitochondria of certain species like p.polycephalum).

The matrices are currently not provided but can be found here: ftp://ftp.ncbi.nih.gov/blast/matrices/

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Versions [RSS]	0.0.0.1, 0.2.0.0, 0.2.1.0, 0.3.0.0, 0.3.1.0, 0.3.3.0
Change log	changelog.md
Dependencies	aeson (>=1.0), attoparsec (>=0.13), base (>=4.7 && <5.0), binary (>=0.7), BiobaseENA (>=0.0.0 && <0.0.1), BiobaseTypes (>=0.2.1 && <0.2.2), BiobaseXNA (>=0.11.1 && <0.11.2), bytestring, cereal (>=0.4), containers, deepseq (>=1.3), directory, file-embed (>=0.0.10), lens (>=4.0), log-domain (>=0.12), mtl (>=2.0), PrimitiveArray (>=0.10.1 && <0.10.2), SciBaseTypes (>=0.1.1 && <0.1.2), text, unordered-containers, vector (>=0.11), vector-th-unbox (>=0.2) [details]
Tested with	ghc ==8.8, ghc ==8.10, ghc ==9.0
License	GPL-3.0-only
Copyright	Christian Hoener zu Siederdissen, 2013 - 2019
Author	Christian Hoener zu Siederdissen, Florian Eggenhofer
Maintainer	choener@bioinf.uni-leipzig.de
Category	Bioinformatics
Home page	https://github.com/choener/BiobaseBlast
Bug tracker	https://github.com/choener/BiobaseBlast/issues
Source repo	head: git clone https://github.com/choener/BiobaseBlast this: git clone https://github.com/choener/BiobaseBlast/tree/0.3.1.0(tag 0.3.1.0)
Uploaded	by FlorianEggenhofer at 2021-06-05T21:06:10Z
Distributions
Reverse Dependencies	4 direct, 0 indirect [details]
Downloads	4306 total (8 in the last 30 days)
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Status	Docs available [build log] Last success reported on 2021-06-05 [all 1 reports]

This library contains BLAST-related functionality.