Safe Haskell	None
Language	Haskell2010

Data.TDigest.Tree

Contents

Construction
- Population
Compression
Statistics
Debug

Description

A new data structure for accurate on-line accumulation of rank-based statistics such as quantiles and trimmed means. . See original paper: "Computing extremely accurate quantiles using t-digest" by Ted Dunning and Otmar Ertl for more details https://github.com/tdunning/t-digest/blob/master/docs/t-digest-paper/histo.pdf.

Examples

>>> quantile 0.99 (tdigest [1..1000] :: TDigest 25)
Just 990.5

>>> quantile 0.99 (tdigest [1..1000] :: TDigest 3)
Just 989.0...

t-Digest is more precise in tails, especially median is imprecise:

>>> median (forceCompress $ tdigest [1..1000] :: TDigest 25)
Just 497.6...

Semigroup

This operation isn't strictly associative, but statistical variables shouldn't be affected.

>>> let td xs = tdigest xs :: TDigest 10

>>> median (td [1..500] <> (td [501..1000] <> td [1001..1500]))
Just 802...

>>> median ((td [1..500] <> td [501..1000]) <> td [1001..1500])
Just 726...

The linear is worst-case scenario:

>>> let td' xs = tdigest (fairshuffle xs) :: TDigest 10

>>> median (td' [1..500] <> (td' [501..1000] <> td' [1001..1500]))
Just 750.3789...

>>> median ((td' [1..500] <> td' [501..1000]) <> td' [1001..1500])
Just 750.3789...

Synopsis

data TDigest (compression :: Nat)
tdigest :: (Foldable f, KnownNat comp) => f Double -> TDigest comp
singleton :: KnownNat comp => Double -> TDigest comp
insert :: KnownNat comp => Double -> TDigest comp -> TDigest comp
insert' :: KnownNat comp => Double -> TDigest comp -> TDigest comp
compress :: forall comp. KnownNat comp => TDigest comp -> TDigest comp
forceCompress :: forall comp. KnownNat comp => TDigest comp -> TDigest comp
minimumValue :: TDigest comp -> Mean
maximumValue :: TDigest comp -> Mean
median :: TDigest comp -> Maybe Double
quantile :: Double -> TDigest comp -> Maybe Double
mean :: TDigest comp -> Maybe Double
variance :: TDigest comp -> Maybe Double
stddev :: TDigest comp -> Maybe Double
cdf :: Double -> TDigest comp -> Double
icdf :: Double -> TDigest comp -> Maybe Double
size :: TDigest comp -> Int
valid :: TDigest comp -> Bool
validate :: TDigest comp -> Either String (TDigest comp)
debugPrint :: TDigest comp -> IO ()

Construction

data TDigest (compression :: Nat) Source #

TDigest is a tree of centroids.

compression is a 1/δ. The greater the value of compression the less likely value merging will happen.

Instances

Instances details

KnownNat comp => Reducer Double (TDigest comp) Source #	Both `cons` and `snoc` are `insert`
Instance details Defined in Data.TDigest.Tree.Internal Methods unit :: Double -> TDigest comp # snoc :: TDigest comp -> Double -> TDigest comp # cons :: Double -> TDigest comp -> TDigest comp #
Show (TDigest compression) Source #
Instance details Defined in Data.TDigest.Tree.Internal Methods showsPrec :: Int -> TDigest compression -> ShowS # show :: TDigest compression -> String # showList :: [TDigest compression] -> ShowS #
KnownNat comp => Semigroup (TDigest comp) Source #
Instance details Defined in Data.TDigest.Tree.Internal Methods (<>) :: TDigest comp -> TDigest comp -> TDigest comp # sconcat :: NonEmpty (TDigest comp) -> TDigest comp # stimes :: Integral b => b -> TDigest comp -> TDigest comp #
KnownNat comp => Monoid (TDigest comp) Source #
Instance details Defined in Data.TDigest.Tree.Internal Methods mempty :: TDigest comp # mappend :: TDigest comp -> TDigest comp -> TDigest comp # mconcat :: [TDigest comp] -> TDigest comp #
KnownNat comp => Binary (TDigest comp) Source #	`TDigest` isn't compressed after de-serialisation, but it can be still smaller.
Instance details Defined in Data.TDigest.Tree.Internal Methods put :: TDigest comp -> Put # get :: Get (TDigest comp) # putList :: [TDigest comp] -> Put #
NFData (TDigest comp) Source #	`TDigest` has only strict fields.
Instance details Defined in Data.TDigest.Tree.Internal Methods rnf :: TDigest comp -> () #
HasHistogram (TDigest comp) Maybe Source #
Instance details Defined in Data.TDigest.Tree.Internal Methods histogram :: TDigest comp -> Maybe (NonEmpty HistBin) Source # totalWeight :: TDigest comp -> Weight Source #

tdigest :: (Foldable f, KnownNat comp) => f Double -> TDigest comp Source #

Strict foldl' over Foldable structure.

Population

singleton :: KnownNat comp => Double -> TDigest comp Source #

Make a TDigest of a single data point.

insert Source #

Arguments

:: KnownNat comp
=> Double	element
-> TDigest comp
-> TDigest comp

Insert single value into TDigest.

insert' Source #

Arguments

:: KnownNat comp
=> Double	element
-> TDigest comp
-> TDigest comp

Insert single value, don't compress TDigest even if needed.

For sensibly bounded input, it makes sense to let TDigest grow (it might grow linearly in size), and after that compress it once.

Compression

>>> let digest = foldl' (flip insert') mempty [0..1000] :: TDigest 10
>>> (size digest, size $ compress digest)
(1001,52)

>>> (quantile 0.1 digest, quantile 0.1 $ compress digest)
(Just 99.6...,Just 89.7...)

Note: when values are inserted in more random order, t-Digest self-compresses on the fly:

>>> let digest = foldl' (flip insert') mempty (fairshuffle [0..1000]) :: TDigest 10
>>> (size digest, size $ compress digest, size $ forceCompress digest)
(78,78,48)

>>> quantile 0.1 digest
Just 98.9...

compress :: forall comp. KnownNat comp => TDigest comp -> TDigest comp Source #

Compress TDigest.

Reinsert the centroids in "better" order (in original paper: in random) so they have opportunity to merge.

Compression will happen only if size is both: bigger than relMaxSize * comp and bigger than absMaxSize.

forceCompress :: forall comp. KnownNat comp => TDigest comp -> TDigest comp Source #

Perform compression, even if current size says it's not necessary.

Statistics

minimumValue :: TDigest comp -> Mean Source #

Center of left-most centroid. Note: may be different than min element inserted.

>>> minimumValue (tdigest [1..100] :: TDigest 3)
1.0

maximumValue :: TDigest comp -> Mean Source #

Center of right-most centroid. Note: may be different than max element inserted.

>>> maximumValue (tdigest [1..100] :: TDigest 3)
99.0

Percentile

median :: TDigest comp -> Maybe Double Source #

Median, i.e. quantile 0.5.

quantile :: Double -> TDigest comp -> Maybe Double Source #

Calculate quantile of a specific value.

Mean & Variance

- >>> stddev (tdigest $ fairshuffle [0..100] :: TDigest 10) Just 29.1...

mean :: TDigest comp -> Maybe Double Source #

Mean.

>>> mean (tdigest [1..100] :: TDigest 10)
Just 50.5

Note: if you only need the mean, calculate it directly.

variance :: TDigest comp -> Maybe Double Source #

Variance.

stddev :: TDigest comp -> Maybe Double Source #

Standard deviation, square root of variance.

CDF

cdf :: Double -> TDigest comp -> Double Source #

Cumulative distribution function.

Note: if this is the only thing you need, it's more efficient to count this directly.

icdf :: Double -> TDigest comp -> Maybe Double Source #

An alias for quantile

Debug

size :: TDigest comp -> Int Source #

valid :: TDigest comp -> Bool Source #

isRight . validate

validate :: TDigest comp -> Either String (TDigest comp) Source #

Check various invariants in the TDigest tree.

debugPrint :: TDigest comp -> IO () Source #

Output the TDigest tree.