seqalign-0.2.0.4: Sequence Alignment

Safe HaskellNone
LanguageHaskell2010

Alignment

Documentation

cDist :: Ptr Word8 -> CSize -> Ptr Word8 -> CSize -> IO CInt Source

editDistance :: ByteString -> ByteString -> Int Source

data KSWR Source

Constructors

KSWR 

Fields

score :: CInt
 
targend :: CInt
 
querend :: CInt
 
score2 :: CInt
 
targend2 :: CInt
 
targbeg :: CInt
 
querbeg :: CInt
 

Instances

cLocalAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr KSWR -> IO () Source

bs_align :: ByteString -> ByteString -> KSWR Source

cCigarAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr CInt -> Ptr (Ptr CInt) -> IO CInt Source

free_finalizer :: FunPtr (Ptr a -> IO ()) Source

cigar_align :: ByteString -> ByteString -> (Int, [(Char, Int)]) Source