{-| Module : Control.Monad.Bayes.Inference.RMSMC Description : Resample-Move Sequential Monte Carlo (RM-SMC) Copyright : (c) Adam Scibior, 2015-2020 License : MIT Maintainer : leonhard.markert@tweag.io Stability : experimental Portability : GHC Resample-move Sequential Monte Carlo (RM-SMC) sampling. Walter Gilks and Carlo Berzuini. 2001. Following a moving target - Monte Carlo inference for dynamic Bayesian models. /Journal of the Royal Statistical Society/ 63 (2001), 127-146. <http://www.mathcs.emory.edu/~whalen/Papers/BNs/MonteCarlo-DBNs.pdf> -} module Control.Monad.Bayes.Inference.RMSMC ( rmsmc, rmsmcLocal, rmsmcBasic ) where import Control.Monad.Bayes.Class import Control.Monad.Bayes.Population import Control.Monad.Bayes.Sequential as Seq import Control.Monad.Bayes.Traced as Tr import qualified Control.Monad.Bayes.Traced.Dynamic as TrDyn import qualified Control.Monad.Bayes.Traced.Basic as TrBas import Control.Monad.Bayes.Helpers -- | Resample-move Sequential Monte Carlo. rmsmc :: MonadSample m => Int -- ^ number of timesteps -> Int -- ^ number of particles -> Int -- ^ number of Metropolis-Hastings transitions after each resampling -> Sequential (Traced (Population m)) a -- ^ model -> Population m a rmsmc k n t = marginal . sis (composeCopies t mhStep . hoistT resampleSystematic) k . hoistS (hoistT (spawn n >>)) -- | Resample-move Sequential Monte Carlo with a more efficient -- tracing representation. rmsmcBasic :: MonadSample m => Int -- ^ number of timesteps -> Int -- ^ number of particles -> Int -- ^ number of Metropolis-Hastings transitions after each resampling -> Sequential (TrBas.Traced (Population m)) a -- ^ model -> Population m a rmsmcBasic k n t = TrBas.marginal . sis (composeCopies t TrBas.mhStep . TrBas.hoistT resampleSystematic) k . hoistS (TrBas.hoistT (spawn n >>)) -- | A variant of resample-move Sequential Monte Carlo -- where only random variables since last resampling are considered -- for rejuvenation. rmsmcLocal :: MonadSample m => Int -- ^ number of timesteps -> Int -- ^ number of particles -> Int -- ^ number of Metropolis-Hastings transitions after each resampling -> Sequential (TrDyn.Traced (Population m)) a -- ^ model -> Population m a rmsmcLocal k n t = TrDyn.marginal . sis (TrDyn.freeze . composeCopies t TrDyn.mhStep . TrDyn.hoistT resampleSystematic) k . hoistS (TrDyn.hoistT (spawn n >>)) -- | Apply a function a given number of times. composeCopies :: Int -> (a -> a) -> (a -> a) composeCopies k f = foldr (.) id (replicate k f)