hs-samtools-0.5.0.0: Read and write SAM, BAM, and CRAM files.
Copyright(c) Matthew Mosior 2023
LicenseBSD-style
Maintainermattm.github@gmail.com
Portabilityportable
Safe HaskellSafe-Inferred
LanguageHaskell2010

Data.SAM.Version1_6.Header.RG

Description

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

SAM version 1.6 Read group data type

data SAM_V1_6_Read_Group Source #

Custom SAM (version 1.6) SAM_V1_6_Read_Group data type. See section 1.3 of the SAM v1.6 specification documentation.

Constructors

SAM_V1_6_Read_Group 

Fields

Instances

Instances details
Show SAM_V1_6_Read_Group Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group -> ShowS #

show :: SAM_V1_6_Read_Group -> String #

showList :: [SAM_V1_6_Read_Group] -> ShowS #

SAM version 1.6 Read group data types

data SAM_V1_6_Read_Group_Identifier Source #

ID tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Identifier 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Identifier :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Identifier -> Rep SAM_V1_6_Read_Group_Identifier x #

to :: Rep SAM_V1_6_Read_Group_Identifier x -> SAM_V1_6_Read_Group_Identifier #

Show SAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Identifier -> ShowS #

show :: SAM_V1_6_Read_Group_Identifier -> String #

showList :: [SAM_V1_6_Read_Group_Identifier] -> ShowS #

Eq SAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool #

(/=) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool #

type Rep SAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Identifier = D1 ('MetaData "SAM_V1_6_Read_Group_Identifier" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_identifier_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_identifier_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Barcode_Sequence Source #

BC tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Barcode_Sequence 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Barcode_Sequence :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Barcode_Sequence -> Rep SAM_V1_6_Read_Group_Barcode_Sequence x #

to :: Rep SAM_V1_6_Read_Group_Barcode_Sequence x -> SAM_V1_6_Read_Group_Barcode_Sequence #

Show SAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Barcode_Sequence -> ShowS #

show :: SAM_V1_6_Read_Group_Barcode_Sequence -> String #

showList :: [SAM_V1_6_Read_Group_Barcode_Sequence] -> ShowS #

Eq SAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool #

(/=) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool #

type Rep SAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Barcode_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Barcode_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Barcode_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Sequencing_Center Source #

CN tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sequencing_Center 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Sequencing_Center :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Sequencing_Center -> Rep SAM_V1_6_Read_Group_Sequencing_Center x #

to :: Rep SAM_V1_6_Read_Group_Sequencing_Center x -> SAM_V1_6_Read_Group_Sequencing_Center #

Show SAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Sequencing_Center -> ShowS #

show :: SAM_V1_6_Read_Group_Sequencing_Center -> String #

showList :: [SAM_V1_6_Read_Group_Sequencing_Center] -> ShowS #

Eq SAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool #

(/=) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool #

type Rep SAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Sequencing_Center = D1 ('MetaData "SAM_V1_6_Read_Group_Sequencing_Center" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sequencing_Center" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Description Source #

DS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Description 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Description :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Description -> Rep SAM_V1_6_Read_Group_Description x #

to :: Rep SAM_V1_6_Read_Group_Description x -> SAM_V1_6_Read_Group_Description #

Show SAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Description -> ShowS #

show :: SAM_V1_6_Read_Group_Description -> String #

showList :: [SAM_V1_6_Read_Group_Description] -> ShowS #

Eq SAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool #

(/=) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool #

type Rep SAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Description = D1 ('MetaData "SAM_V1_6_Read_Group_Description" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_description_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Run_Date Source #

DT tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Run_Date 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Run_Date :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Run_Date -> Rep SAM_V1_6_Read_Group_Run_Date x #

to :: Rep SAM_V1_6_Read_Group_Run_Date x -> SAM_V1_6_Read_Group_Run_Date #

Show SAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Run_Date -> ShowS #

show :: SAM_V1_6_Read_Group_Run_Date -> String #

showList :: [SAM_V1_6_Read_Group_Run_Date] -> ShowS #

Eq SAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool #

(/=) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool #

type Rep SAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Run_Date = D1 ('MetaData "SAM_V1_6_Read_Group_Run_Date" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Run_Date" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Flow_Order Source #

FO tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Flow_Order 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Flow_Order :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Flow_Order -> Rep SAM_V1_6_Read_Group_Flow_Order x #

to :: Rep SAM_V1_6_Read_Group_Flow_Order x -> SAM_V1_6_Read_Group_Flow_Order #

Show SAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Flow_Order -> ShowS #

show :: SAM_V1_6_Read_Group_Flow_Order -> String #

showList :: [SAM_V1_6_Read_Group_Flow_Order] -> ShowS #

Eq SAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool #

(/=) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool #

type Rep SAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Flow_Order = D1 ('MetaData "SAM_V1_6_Read_Group_Flow_Order" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Flow_Order" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Key_Sequence Source #

KS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Key_Sequence 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Key_Sequence :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Key_Sequence -> Rep SAM_V1_6_Read_Group_Key_Sequence x #

to :: Rep SAM_V1_6_Read_Group_Key_Sequence x -> SAM_V1_6_Read_Group_Key_Sequence #

Show SAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Key_Sequence -> ShowS #

show :: SAM_V1_6_Read_Group_Key_Sequence -> String #

showList :: [SAM_V1_6_Read_Group_Key_Sequence] -> ShowS #

Eq SAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool #

(/=) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool #

type Rep SAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Key_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Key_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Key_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Library Source #

LB tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Library 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Library :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Library -> Rep SAM_V1_6_Read_Group_Library x #

to :: Rep SAM_V1_6_Read_Group_Library x -> SAM_V1_6_Read_Group_Library #

Show SAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Library -> ShowS #

show :: SAM_V1_6_Read_Group_Library -> String #

showList :: [SAM_V1_6_Read_Group_Library] -> ShowS #

Eq SAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool #

(/=) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool #

type Rep SAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Library = D1 ('MetaData "SAM_V1_6_Read_Group_Library" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Library" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_library_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_library_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Programs Source #

PG tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Programs 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Programs :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Programs -> Rep SAM_V1_6_Read_Group_Programs x #

to :: Rep SAM_V1_6_Read_Group_Programs x -> SAM_V1_6_Read_Group_Programs #

Show SAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Programs -> ShowS #

show :: SAM_V1_6_Read_Group_Programs -> String #

showList :: [SAM_V1_6_Read_Group_Programs] -> ShowS #

Eq SAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool #

(/=) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool #

type Rep SAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Programs = D1 ('MetaData "SAM_V1_6_Read_Group_Programs" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Programs" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_programs_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_programs_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #

PI tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Predicted_Median_Insert_Size 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x #

to :: Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size #

Show SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> ShowS #

show :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> String #

showList :: [SAM_V1_6_Read_Group_Predicted_Median_Insert_Size] -> ShowS #

Eq SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool #

(/=) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool #

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size = D1 ('MetaData "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform Source #

PL tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Platform -> Rep SAM_V1_6_Read_Group_Platform x #

to :: Rep SAM_V1_6_Read_Group_Platform x -> SAM_V1_6_Read_Group_Platform #

Show SAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform -> ShowS #

show :: SAM_V1_6_Read_Group_Platform -> String #

showList :: [SAM_V1_6_Read_Group_Platform] -> ShowS #

Eq SAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool #

(/=) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool #

type Rep SAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform = D1 ('MetaData "SAM_V1_6_Read_Group_Platform" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform_Model Source #

PM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Model 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform_Model :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Platform_Model -> Rep SAM_V1_6_Read_Group_Platform_Model x #

to :: Rep SAM_V1_6_Read_Group_Platform_Model x -> SAM_V1_6_Read_Group_Platform_Model #

Show SAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Model -> ShowS #

show :: SAM_V1_6_Read_Group_Platform_Model -> String #

showList :: [SAM_V1_6_Read_Group_Platform_Model] -> ShowS #

Eq SAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool #

(/=) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool #

type Rep SAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform_Model = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Model" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Model" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform_Unit Source #

PU tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Unit 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform_Unit :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Platform_Unit -> Rep SAM_V1_6_Read_Group_Platform_Unit x #

to :: Rep SAM_V1_6_Read_Group_Platform_Unit x -> SAM_V1_6_Read_Group_Platform_Unit #

Show SAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Unit -> ShowS #

show :: SAM_V1_6_Read_Group_Platform_Unit -> String #

showList :: [SAM_V1_6_Read_Group_Platform_Unit] -> ShowS #

Eq SAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool #

(/=) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool #

type Rep SAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform_Unit = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Unit" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Unit" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Sample Source #

SM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sample 

Fields

Instances

Instances details
Generic SAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Sample :: Type -> Type #

Methods

from :: SAM_V1_6_Read_Group_Sample -> Rep SAM_V1_6_Read_Group_Sample x #

to :: Rep SAM_V1_6_Read_Group_Sample x -> SAM_V1_6_Read_Group_Sample #

Show SAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Sample -> ShowS #

show :: SAM_V1_6_Read_Group_Sample -> String #

showList :: [SAM_V1_6_Read_Group_Sample] -> ShowS #

Eq SAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool #

(/=) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool #

type Rep SAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Sample = D1 ('MetaData "SAM_V1_6_Read_Group_Sample" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.5.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sample" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sample_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sample_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))