hs-samtools-0.2.0.1: Read and write SAM, BAM, and CRAM files.
Copyright(c) Matthew Mosior 2023
LicenseBSD-style
Maintainermattm.github@gmail.com
Portabilityportable
Safe HaskellSafe-Inferred
LanguageHaskell2010

Data.SAM.Version1_6.Header.SQ

Description

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

SAM version 1.6 Reference sequence dictionary data type

data SAM_V1_6_Reference_Sequence_Dictionary Source #

Custom SAM (version 1.6) SAM_V1_6_Reference_Sequence_Dictionary data type. See section 1.3 of the SAM v1.6 specification documentation.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary -> Rep SAM_V1_6_Reference_Sequence_Dictionary x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary x -> SAM_V1_6_Reference_Sequence_Dictionary #

type Rep SAM_V1_6_Reference_Sequence_Dictionary Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary" 'PrefixI 'True) (((S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_sequence_name") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_sequence_length") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length)) :*: (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_alternative_locus") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus)) :*: (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_alternative_reference_sequence_names") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_genome_assembly_identifier") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier))))) :*: ((S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_description") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_Description)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_md5_checksum") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum))) :*: (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_species") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_Species)) :*: (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_molecule_topology") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_uri") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Reference_Sequence_Dictionary_URI)))))))

SAM version 1.6 Reference sequence dictionary data types

data SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source #

SN tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name x -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name #

Show SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_sequence_name_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_sequence_name_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source #

LN tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length x -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length #

Show SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_sequence_length_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_sequence_length_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source #

AH tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus x -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus #

Show SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_alternative_locus_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_alternative_locus_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source #

AN tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names x -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names #

Show SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_alternative_reference_sequence_names_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_reference_alternative_reference_sequence_names_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source #

AS tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier x -> SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier #

Show SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_genome_assembly_identifier_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_genome_assembly_identifier_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_Description Source #

DS tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Description 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Description :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Description -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Description x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Description x -> SAM_V1_6_Reference_Sequence_Dictionary_Description #

Show SAM_V1_6_Reference_Sequence_Dictionary_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Description -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Description -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Description] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Description -> SAM_V1_6_Reference_Sequence_Dictionary_Description -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Description -> SAM_V1_6_Reference_Sequence_Dictionary_Description -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Description Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Description = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Description" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_description_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source #

M5 tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> Rep SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum x -> SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum #

Show SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_md5_checksum_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_md5_checksum_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_Species Source #

SP tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Species 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Species Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Species :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Species -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Species x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Species x -> SAM_V1_6_Reference_Sequence_Dictionary_Species #

Show SAM_V1_6_Reference_Sequence_Dictionary_Species Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Species -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Species -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Species] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Species Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Species -> SAM_V1_6_Reference_Sequence_Dictionary_Species -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Species -> SAM_V1_6_Reference_Sequence_Dictionary_Species -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Species Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Species = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Species" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Species" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_species_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_species_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source #

TP tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> Rep SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology x -> SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology #

Show SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_molecule_topology_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_molecule_topology_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Reference_Sequence_Dictionary_URI Source #

UR tag for SAM_V1_6_Reference_Sequence_Dictionary.

Constructors

SAM_V1_6_Reference_Sequence_Dictionary_URI 

Fields

Instances

Instances details
Generic SAM_V1_6_Reference_Sequence_Dictionary_URI Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Associated Types

type Rep SAM_V1_6_Reference_Sequence_Dictionary_URI :: Type -> Type #

Methods

from :: SAM_V1_6_Reference_Sequence_Dictionary_URI -> Rep SAM_V1_6_Reference_Sequence_Dictionary_URI x #

to :: Rep SAM_V1_6_Reference_Sequence_Dictionary_URI x -> SAM_V1_6_Reference_Sequence_Dictionary_URI #

Show SAM_V1_6_Reference_Sequence_Dictionary_URI Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

showsPrec :: Int -> SAM_V1_6_Reference_Sequence_Dictionary_URI -> ShowS #

show :: SAM_V1_6_Reference_Sequence_Dictionary_URI -> String #

showList :: [SAM_V1_6_Reference_Sequence_Dictionary_URI] -> ShowS #

Eq SAM_V1_6_Reference_Sequence_Dictionary_URI Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

Methods

(==) :: SAM_V1_6_Reference_Sequence_Dictionary_URI -> SAM_V1_6_Reference_Sequence_Dictionary_URI -> Bool #

(/=) :: SAM_V1_6_Reference_Sequence_Dictionary_URI -> SAM_V1_6_Reference_Sequence_Dictionary_URI -> Bool #

type Rep SAM_V1_6_Reference_Sequence_Dictionary_URI Source # 
Instance details

Defined in Data.SAM.Version1_6.Header.SQ

type Rep SAM_V1_6_Reference_Sequence_Dictionary_URI = D1 ('MetaData "SAM_V1_6_Reference_Sequence_Dictionary_URI" "Data.SAM.Version1_6.Header.SQ" "hs-samtools-0.2.0.1-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Reference_Sequence_Dictionary_URI" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_uri_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_reference_sequence_dictionary_uri_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))