Copyright	(c) Matthew Mosior 2023
License	BSD-style
Maintainer	mattm.github@gmail.com
Portability	portable
Safe Haskell	Safe-Inferred
Language	Haskell2010

Data.SAM.Version1_6.Header.RG

Contents

SAM version 1.6 Read group data type
SAM version 1.6 Read group data types

Description

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

data SAM_V1_6_Read_Group = SAM_V1_6_Read_Group {
}
data SAM_V1_6_Read_Group_Identifier = SAM_V1_6_Read_Group_Identifier {
- sam_v1_6_read_group_identifer_tag :: Seq Word8
- sam_v1_6_read_group_identifer_value :: ByteString
}
data SAM_V1_6_Read_Group_Barcode_Sequence = SAM_V1_6_Read_Group_Barcode_Sequence {
- sam_v1_6_read_group_barcode_sequence_tag :: Seq Word8
- sam_v1_6_read_group_barcode_sequence_value :: ByteString
}
data SAM_V1_6_Read_Group_Sequencing_Center = SAM_V1_6_Read_Group_Sequencing_Center {
- sam_v1_6_read_group_sequencing_center_tag :: Seq Word8
- sam_v1_6_read_group_sequencing_center_value :: ByteString
}
data SAM_V1_6_Read_Group_Description = SAM_V1_6_Read_Group_Description {
- sam_v1_6_read_group_description_tag :: Seq Word8
- sam_v1_6_read_group_description_value :: ByteString
}
data SAM_V1_6_Read_Group_Run_Date = SAM_V1_6_Read_Group_Run_Date {
- sam_v1_6_read_group_run_date_tag :: Seq Word8
- sam_v1_6_read_group_run_date_value :: ByteString
}
data SAM_V1_6_Read_Group_Flow_Order = SAM_V1_6_Read_Group_Flow_Order {
- sam_v1_6_read_group_flow_order_tag :: Seq Word8
- sam_v1_6_read_group_flow_order_value :: ByteString
}
data SAM_V1_6_Read_Group_Key_Sequence = SAM_V1_6_Read_Group_Key_Sequence {
- sam_v1_6_read_group_key_sequence_tag :: Seq Word8
- sam_v1_6_read_group_key_sequence_value :: ByteString
}
data SAM_V1_6_Read_Group_Library = SAM_V1_6_Read_Group_Library {
- sam_v1_6_read_group_library_tag :: Seq Word8
- sam_v1_6_read_group_library_value :: ByteString
}
data SAM_V1_6_Read_Group_Programs = SAM_V1_6_Read_Group_Programs {
- sam_v1_6_read_group_programs_tag :: Seq Word8
- sam_v1_6_read_group_programs_value :: ByteString
}
data SAM_V1_6_Read_Group_Predicted_Median_Insert_Size = SAM_V1_6_Read_Group_Predicted_Median_Insert_Size {
- sam_v1_6_read_group_predicted_median_insert_size_tag :: Seq Word8
- sam_v1_6_read_group_predicted_median_insert_size_value :: ByteString
}
data SAM_V1_6_Read_Group_Platform = SAM_V1_6_Read_Group_Platform {
- sam_v1_6_read_group_platform_tag :: Seq Word8
- sam_v1_6_read_group_platform_value :: ByteString
}
data SAM_V1_6_Read_Group_Platform_Model = SAM_V1_6_Read_Group_Platform_Model {
- sam_v1_6_read_group_platform_model_tag :: Seq Word8
- sam_v1_6_read_group_platform_model_value :: ByteString
}
data SAM_V1_6_Read_Group_Platform_Unit = SAM_V1_6_Read_Group_Platform_Unit {
- sam_v1_6_read_group_platform_unit_tag :: Seq Word8
- sam_v1_6_read_group_platform_unit_value :: ByteString
}
data SAM_V1_6_Read_Group_Sample = SAM_V1_6_Read_Group_Sample {
- sam_v1_6_read_group_sample_tag :: Seq Word8
- sam_v1_6_read_group_sample_value :: ByteString
}

SAM version 1.6 Read group data type

data SAM_V1_6_Read_Group Source #

Custom SAM (version 1.6) SAM_V1_6_Read_Group data type. See section 1.3 of the SAM v1.6 specification documentation.

Constructors

SAM_V1_6_Read_Group

Fields

SAM version 1.6 Read group data types

data SAM_V1_6_Read_Group_Identifier Source #

ID tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Identifier
Fields sam_v1_6_read_group_identifer_tag :: Seq Word8 sam_v1_6_read_group_identifer_value :: ByteString

data SAM_V1_6_Read_Group_Barcode_Sequence Source #

BC tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Barcode_Sequence
Fields sam_v1_6_read_group_barcode_sequence_tag :: Seq Word8 sam_v1_6_read_group_barcode_sequence_value :: ByteString

data SAM_V1_6_Read_Group_Sequencing_Center Source #

CN tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sequencing_Center
Fields sam_v1_6_read_group_sequencing_center_tag :: Seq Word8 sam_v1_6_read_group_sequencing_center_value :: ByteString

data SAM_V1_6_Read_Group_Description Source #

DS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Description
Fields sam_v1_6_read_group_description_tag :: Seq Word8 sam_v1_6_read_group_description_value :: ByteString

data SAM_V1_6_Read_Group_Run_Date Source #

DT tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Run_Date
Fields sam_v1_6_read_group_run_date_tag :: Seq Word8 sam_v1_6_read_group_run_date_value :: ByteString

data SAM_V1_6_Read_Group_Flow_Order Source #

FO tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Flow_Order
Fields sam_v1_6_read_group_flow_order_tag :: Seq Word8 sam_v1_6_read_group_flow_order_value :: ByteString

data SAM_V1_6_Read_Group_Key_Sequence Source #

KS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Key_Sequence
Fields sam_v1_6_read_group_key_sequence_tag :: Seq Word8 sam_v1_6_read_group_key_sequence_value :: ByteString

data SAM_V1_6_Read_Group_Library Source #

LB tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Library
Fields sam_v1_6_read_group_library_tag :: Seq Word8 sam_v1_6_read_group_library_value :: ByteString

data SAM_V1_6_Read_Group_Programs Source #

PG tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Programs
Fields sam_v1_6_read_group_programs_tag :: Seq Word8 sam_v1_6_read_group_programs_value :: ByteString

data SAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #

PI tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Predicted_Median_Insert_Size
Fields sam_v1_6_read_group_predicted_median_insert_size_tag :: Seq Word8 sam_v1_6_read_group_predicted_median_insert_size_value :: ByteString

data SAM_V1_6_Read_Group_Platform Source #

PL tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform
Fields sam_v1_6_read_group_platform_tag :: Seq Word8 sam_v1_6_read_group_platform_value :: ByteString

data SAM_V1_6_Read_Group_Platform_Model Source #

PM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Model
Fields sam_v1_6_read_group_platform_model_tag :: Seq Word8 sam_v1_6_read_group_platform_model_value :: ByteString

data SAM_V1_6_Read_Group_Platform_Unit Source #

PU tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Unit
Fields sam_v1_6_read_group_platform_unit_tag :: Seq Word8 sam_v1_6_read_group_platform_unit_value :: ByteString

data SAM_V1_6_Read_Group_Sample Source #

SM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sample
Fields sam_v1_6_read_group_sample_tag :: Seq Word8 sam_v1_6_read_group_sample_value :: ByteString