Build #3 for hPDB-1.2.0.7
| Package | hPDB-1.2.0.7 |
|---|
| Install | BuildFailed |
|---|---|
| Docs | NotTried |
| Tests | NotTried |
| Time submitted | 2016-11-24 13:17:56.209596 UTC |
|---|---|
| Compiler | ghc-8.0.1.20161018 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | AC-Vector-2.3.2, Octree-0.5.4.3, QuickCheck-2.9.2, base-4.9.0.0, bytestring-0.10.8.1, containers-0.5.7.1, deepseq-1.4.2.0, directory-1.2.6.2, ghc-prim-0.5.0.0, iterable-3.0, mmap-0.5.9, mtl-2.2.1, parallel-3.2.1.0, tagged-0.8.5, template-haskell-2.11.0.0, text-1.2.2.1, unordered-containers-0.2.7.1, vector-0.11.0.0, zlib-0.6.1.2 |
| Flags | -have-text-format have-sse2 have-mmap |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Resolving dependencies...
Configuring AC-Vector-2.3.2...
Configuring mmap-0.5.9...
Building AC-Vector-2.3.2...
Building mmap-0.5.9...
Installed mmap-0.5.9
Configuring mtl-2.2.1...
Building mtl-2.2.1...
Configuring parallel-3.2.1.0...
Installed AC-Vector-2.3.2
Building parallel-3.2.1.0...
Configuring primitive-0.6.1.0...
Installed parallel-3.2.1.0
Configuring random-1.1...
Installed mtl-2.2.1
Building primitive-0.6.1.0...
Building random-1.1...
Configuring text-1.2.2.1...
Installed random-1.1
Building text-1.2.2.1...
Configuring transformers-compat-0.5.1.4...
Installed primitive-0.6.1.0
Building transformers-compat-0.5.1.4...
Configuring zlib-0.6.1.2...
Installed transformers-compat-0.5.1.4
Building zlib-0.6.1.2...
Installed zlib-0.6.1.2
Configuring tf-random-0.5...
Building tf-random-0.5...
Configuring vector-0.11.0.0...
Installed tf-random-0.5
Building vector-0.11.0.0...
Configuring tagged-0.8.5...
Installed text-1.2.2.1
Building tagged-0.8.5...
Installed tagged-0.8.5
Configuring hashable-1.2.4.0...
Building hashable-1.2.4.0...
Configuring QuickCheck-2.9.2...
Installed hashable-1.2.4.0
Building QuickCheck-2.9.2...
Installed vector-0.11.0.0
Configuring iterable-3.0...
Building iterable-3.0...
Configuring unordered-containers-0.2.7.1...
Installed QuickCheck-2.9.2
Installed iterable-3.0
Configuring Octree-0.5.4.3...
Building unordered-containers-0.2.7.1...
Building Octree-0.5.4.3...
Installed Octree-0.5.4.3
Installed unordered-containers-0.2.7.1
Configuring hPDB-1.2.0.7...
Building hPDB-1.2.0.7...
Failed to install hPDB-1.2.0.7
Build log ( /home/builder/.cabal/logs/hPDB-1.2.0.7.log ):
cabal: Entering directory '/tmp/cabal-tmp-7858/hPDB-1.2.0.7'
Configuring hPDB-1.2.0.7...
Building hPDB-1.2.0.7...
Preprocessing library hPDB-1.2.0.7...
Bio/PDB/Iterable/Instances.hs:1:78: warning:
-XOverlappingInstances is deprecated: instead use per-instance pragmas OVERLAPPING/OVERLAPPABLE/OVERLAPS
[ 1 of 60] Compiling Bio.PDB.Util.ParFold ( Bio/PDB/Util/ParFold.hs, dist/build/Bio/PDB/Util/ParFold.o )
[ 2 of 60] Compiling Bio.PDB.Util.MissingInstances ( Bio/PDB/Util/MissingInstances.hs, dist/build/Bio/PDB/Util/MissingInstances.o )
[ 3 of 60] Compiling Bio.PDB.Structure.Vector ( Bio/PDB/Structure/Vector.hs, dist/build/Bio/PDB/Structure/Vector.o )
[ 4 of 60] Compiling Bio.PDB.Structure.List ( Bio/PDB/Structure/List.hs, dist/build/Bio/PDB/Structure/List.o )
[ 5 of 60] Compiling Bio.PDB.IO.OpenAnyFile ( Bio/PDB/IO/OpenAnyFile.hs, dist/build/Bio/PDB/IO/OpenAnyFile.o )
[ 6 of 60] Compiling Bio.PDB.EventParser.StrandSense ( Bio/PDB/EventParser/StrandSense.hs, dist/build/Bio/PDB/EventParser/StrandSense.o )
[ 7 of 60] Compiling Bio.PDB.EventParser.HelixTypes ( Bio/PDB/EventParser/HelixTypes.hs, dist/build/Bio/PDB/EventParser/HelixTypes.o )
[ 8 of 60] Compiling Bio.PDB.EventParser.FastParse ( Bio/PDB/EventParser/FastParse.hs, dist/build/Bio/PDB/EventParser/FastParse.o )
[ 9 of 60] Compiling Bio.PDB.EventParser.ExperimentalMethods ( Bio/PDB/EventParser/ExperimentalMethods.hs, dist/build/Bio/PDB/EventParser/ExperimentalMethods.o )
[10 of 60] Compiling Bio.PDB.Common ( Bio/PDB/Common.hs, dist/build/Bio/PDB/Common.o )
[11 of 60] Compiling Bio.PDB.EventParser.PDBEvents ( Bio/PDB/EventParser/PDBEvents.hs, dist/build/Bio/PDB/EventParser/PDBEvents.o )
[12 of 60] Compiling Bio.PDB.EventParser.PDBEventPrinter ( Bio/PDB/EventParser/PDBEventPrinter.hs, dist/build/Bio/PDB/EventParser/PDBEventPrinter.o )
[13 of 60] Compiling Bio.PDB.EventParser.PDBParsingAbstractions ( Bio/PDB/EventParser/PDBParsingAbstractions.hs, dist/build/Bio/PDB/EventParser/PDBParsingAbstractions.o )
[14 of 60] Compiling Bio.PDB.EventParser.ParseATOM ( Bio/PDB/EventParser/ParseATOM.hs, dist/build/Bio/PDB/EventParser/ParseATOM.o )
[15 of 60] Compiling Bio.PDB.EventParser.ParseCAVEAT ( Bio/PDB/EventParser/ParseCAVEAT.hs, dist/build/Bio/PDB/EventParser/ParseCAVEAT.o )
[16 of 60] Compiling Bio.PDB.EventParser.ParseCISPEP ( Bio/PDB/EventParser/ParseCISPEP.hs, dist/build/Bio/PDB/EventParser/ParseCISPEP.o )
[17 of 60] Compiling Bio.PDB.EventParser.ParseCONECT ( Bio/PDB/EventParser/ParseCONECT.hs, dist/build/Bio/PDB/EventParser/ParseCONECT.o )
[18 of 60] Compiling Bio.PDB.EventParser.ParseCRYST1 ( Bio/PDB/EventParser/ParseCRYST1.hs, dist/build/Bio/PDB/EventParser/ParseCRYST1.o )
[19 of 60] Compiling Bio.PDB.EventParser.ParseDBREF ( Bio/PDB/EventParser/ParseDBREF.hs, dist/build/Bio/PDB/EventParser/ParseDBREF.o )
[20 of 60] Compiling Bio.PDB.EventParser.ParseFORMUL ( Bio/PDB/EventParser/ParseFORMUL.hs, dist/build/Bio/PDB/EventParser/ParseFORMUL.o )
[21 of 60] Compiling Bio.PDB.EventParser.ParseHEADER ( Bio/PDB/EventParser/ParseHEADER.hs, dist/build/Bio/PDB/EventParser/ParseHEADER.o )
[22 of 60] Compiling Bio.PDB.EventParser.ParseHELIX ( Bio/PDB/EventParser/ParseHELIX.hs, dist/build/Bio/PDB/EventParser/ParseHELIX.o )
[23 of 60] Compiling Bio.PDB.EventParser.ParseHET ( Bio/PDB/EventParser/ParseHET.hs, dist/build/Bio/PDB/EventParser/ParseHET.o )
[24 of 60] Compiling Bio.PDB.EventParser.ParseHETNAM ( Bio/PDB/EventParser/ParseHETNAM.hs, dist/build/Bio/PDB/EventParser/ParseHETNAM.o )
[25 of 60] Compiling Bio.PDB.EventParser.ParseHYDBND ( Bio/PDB/EventParser/ParseHYDBND.hs, dist/build/Bio/PDB/EventParser/ParseHYDBND.o )
[26 of 60] Compiling Bio.PDB.EventParser.ParseIntRecord ( Bio/PDB/EventParser/ParseIntRecord.hs, dist/build/Bio/PDB/EventParser/ParseIntRecord.o )
[27 of 60] Compiling Bio.PDB.EventParser.ParseJRNL ( Bio/PDB/EventParser/ParseJRNL.hs, dist/build/Bio/PDB/EventParser/ParseJRNL.o )
[28 of 60] Compiling Bio.PDB.EventParser.ParseLINK ( Bio/PDB/EventParser/ParseLINK.hs, dist/build/Bio/PDB/EventParser/ParseLINK.o )
[29 of 60] Compiling Bio.PDB.EventParser.ParseListRecord ( Bio/PDB/EventParser/ParseListRecord.hs, dist/build/Bio/PDB/EventParser/ParseListRecord.o )
[30 of 60] Compiling Bio.PDB.EventParser.ParseMASTER ( Bio/PDB/EventParser/ParseMASTER.hs, dist/build/Bio/PDB/EventParser/ParseMASTER.o )
[31 of 60] Compiling Bio.PDB.EventParser.ParseMODRES ( Bio/PDB/EventParser/ParseMODRES.hs, dist/build/Bio/PDB/EventParser/ParseMODRES.o )
[32 of 60] Compiling Bio.PDB.EventParser.ParseMatrixRecord ( Bio/PDB/EventParser/ParseMatrixRecord.hs, dist/build/Bio/PDB/EventParser/ParseMatrixRecord.o )
[33 of 60] Compiling Bio.PDB.EventParser.ParseObsoleting ( Bio/PDB/EventParser/ParseObsoleting.hs, dist/build/Bio/PDB/EventParser/ParseObsoleting.o )
[34 of 60] Compiling Bio.PDB.EventParser.ParseREMARK ( Bio/PDB/EventParser/ParseREMARK.hs, dist/build/Bio/PDB/EventParser/ParseREMARK.o )
[35 of 60] Compiling Bio.PDB.EventParser.ParseREVDAT ( Bio/PDB/EventParser/ParseREVDAT.hs, dist/build/Bio/PDB/EventParser/ParseREVDAT.o )
[36 of 60] Compiling Bio.PDB.EventParser.ParseSEQADV ( Bio/PDB/EventParser/ParseSEQADV.hs, dist/build/Bio/PDB/EventParser/ParseSEQADV.o )
[37 of 60] Compiling Bio.PDB.EventParser.ParseSEQRES ( Bio/PDB/EventParser/ParseSEQRES.hs, dist/build/Bio/PDB/EventParser/ParseSEQRES.o )
[38 of 60] Compiling Bio.PDB.EventParser.ParseSHEET ( Bio/PDB/EventParser/ParseSHEET.hs, dist/build/Bio/PDB/EventParser/ParseSHEET.o )
[39 of 60] Compiling Bio.PDB.EventParser.ParseSITE ( Bio/PDB/EventParser/ParseSITE.hs, dist/build/Bio/PDB/EventParser/ParseSITE.o )
[40 of 60] Compiling Bio.PDB.EventParser.ParseSLTBRG ( Bio/PDB/EventParser/ParseSLTBRG.hs, dist/build/Bio/PDB/EventParser/ParseSLTBRG.o )
[41 of 60] Compiling Bio.PDB.EventParser.ParseSPLIT ( Bio/PDB/EventParser/ParseSPLIT.hs, dist/build/Bio/PDB/EventParser/ParseSPLIT.o )
[42 of 60] Compiling Bio.PDB.EventParser.ParseSSBOND ( Bio/PDB/EventParser/ParseSSBOND.hs, dist/build/Bio/PDB/EventParser/ParseSSBOND.o )
[43 of 60] Compiling Bio.PDB.EventParser.ParseSpecListRecord ( Bio/PDB/EventParser/ParseSpecListRecord.hs, dist/build/Bio/PDB/EventParser/ParseSpecListRecord.o )
[44 of 60] Compiling Bio.PDB.EventParser.ParseTER ( Bio/PDB/EventParser/ParseTER.hs, dist/build/Bio/PDB/EventParser/ParseTER.o )
[45 of 60] Compiling Bio.PDB.EventParser.ParseTITLE ( Bio/PDB/EventParser/ParseTITLE.hs, dist/build/Bio/PDB/EventParser/ParseTITLE.o )
[46 of 60] Compiling Bio.PDB.EventParser.ParseTVECT ( Bio/PDB/EventParser/ParseTVECT.hs, dist/build/Bio/PDB/EventParser/ParseTVECT.o )
[47 of 60] Compiling Bio.PDB.EventParser.PDBEventParser ( Bio/PDB/EventParser/PDBEventParser.hs, dist/build/Bio/PDB/EventParser/PDBEventParser.o )
[48 of 60] Compiling Bio.PDB.Structure ( Bio/PDB/Structure.hs, dist/build/Bio/PDB/Structure.o )
[49 of 60] Compiling Bio.PDB.Iterable.Instances ( Bio/PDB/Iterable/Instances.hs, dist/build/Bio/PDB/Iterable/Instances.o )
[50 of 60] Compiling Bio.PDB.Iterable.Utils ( Bio/PDB/Iterable/Utils.hs, dist/build/Bio/PDB/Iterable/Utils.o )
[51 of 60] Compiling Bio.PDB.Iterable ( Bio/PDB/Iterable.hs, dist/build/Bio/PDB/Iterable.o )
[52 of 60] Compiling Bio.PDB.Fasta ( Bio/PDB/Fasta.hs, dist/build/Bio/PDB/Fasta.o )
[53 of 60] Compiling Bio.PDB.Structure.Elements ( Bio/PDB/Structure/Elements.hs, dist/build/Bio/PDB/Structure/Elements.o )
Bio/PDB/Structure/Elements.hs:32:30: error:
• Couldn't match type ‘ByteString’ with ‘[Char]’
Expected type: HashMap [Char] v
Actual type: HashMap Element v
• In the second argument of ‘M.lookup’, namely ‘dict’
In the second argument of ‘($)’, namely ‘M.lookup (unpack e) dict’
In the expression: fromMaybe withWarning $ M.lookup (unpack e) dict
cabal: Leaving directory '/tmp/cabal-tmp-7858/hPDB-1.2.0.7'
cabal: Error: some packages failed to install:
hPDB-1.2.0.7 failed during the building phase. The exception was:
ExitFailure 1
Test log
No test log was submitted for this report.