Index

AbsoluteTime
1 (Type/Class)	Epidemic.Types.Time
2 (Data Constructor)	Epidemic.Types.Time
addPerson	Epidemic.Types.Population
allEvents	Epidemic
allTimes	Epidemic.Types.Time
ampersandBuilder	Epidemic.Types.Newick
asNewickString	Epidemic.Types.Newick
asPeople	Epidemic.Types.Population
asTimed	Epidemic.Types.Time
BDSCODParameters
1 (Type/Class)	Epidemic.Model.BDSCOD
2 (Data Constructor)	Epidemic.Model.BDSCOD
BDSCODPopulation
1 (Type/Class)	Epidemic.Model.BDSCOD
2 (Data Constructor)	Epidemic.Model.BDSCOD
birthProb	Epidemic.Types.Parameter
Branch	Epidemic.Types.Events
cadlagValue	Epidemic.Types.Time
catastrophePeopleBuilder	Epidemic.Types.Newick
colonBuilder	Epidemic.Types.Newick
commaBuilder	Epidemic.Types.Newick
configuration
1 (Function)	Epidemic.Model.LogisticBDSD
2 (Function)	Epidemic.Model.InhomogeneousBDS
3 (Function)	Epidemic.Model.BDSCOD
count'	Epidemic.Utility
derivedFrom	Epidemic.Types.Events
diracDeltaValue	Epidemic.Types.Time
EpidemicEvent	Epidemic.Types.Events
EpidemicTree	Epidemic.Types.Events
eventPopDelta	Epidemic
eventRate	Epidemic.Types.Parameter
eventTime	Epidemic.Types.Events
Extinction	Epidemic.Types.Events
finalSize	Epidemic.Utility
firstScheduled	Epidemic
hasTime	Epidemic.Types.Time
haveCommonPeople	Epidemic.Types.Population
Identifier
1 (Type/Class)	Epidemic.Types.Population
2 (Data Constructor)	Epidemic.Types.Population
includesPerson	Epidemic.Types.Population
IndividualSample	Epidemic.Types.Events
indSampPerson	Epidemic.Types.Events
indSampSeq	Epidemic.Types.Events
indSampTime	Epidemic.Types.Events
infected	Epidemic
infectedBy	Epidemic
Infection	Epidemic.Types.Events
infectiousPeople	Epidemic.Types.Population
InhomBDSPop
1 (Type/Class)	Epidemic.Model.InhomogeneousBDS
2 (Data Constructor)	Epidemic.Model.InhomogeneousBDS
InhomBDSRates
1 (Type/Class)	Epidemic.Model.InhomogeneousBDS
2 (Data Constructor)	Epidemic.Model.InhomogeneousBDS
inhomBDSRates	Epidemic.Model.InhomogeneousBDS
inhomExponential	Epidemic.Utility
initialIdentifier	Epidemic.Utility
isAscending	Epidemic.Types.Time
isExtinctionOrStopping	Epidemic.Types.Events
isInfected	Epidemic.Types.Population
isReconTreeLeaf	Epidemic.Utility
Leaf	Epidemic.Types.Events
leftBraceBuilder	Epidemic.Types.Newick
LogisticBDSDParameters
1 (Type/Class)	Epidemic.Model.LogisticBDSD
2 (Data Constructor)	Epidemic.Model.LogisticBDSD
LogisticBDSDPopulation
1 (Type/Class)	Epidemic.Model.LogisticBDSD
2 (Data Constructor)	Epidemic.Model.LogisticBDSD
maybeEpidemicTree	Epidemic.Types.Events
maybeReconstructedTree	Epidemic.Types.Observations
maybeToRight	Epidemic.Utility
ModelParameters	Epidemic.Types.Parameter
NBranch
1 (Type/Class)	Epidemic.Utility
2 (Data Constructor)	Epidemic.Utility
NBranchSet
1 (Type/Class)	Epidemic.Utility
2 (Data Constructor)	Epidemic.Utility
Newick	Epidemic.Types.Newick
newPerson	Epidemic.Utility
nextTime	Epidemic.Types.Time
NInternal	Epidemic.Utility
NLeaf	Epidemic.Utility
NLength	Epidemic.Utility
NName	Epidemic.Utility
noScheduledEvent	Epidemic
NSubtree	Epidemic.Utility
NTree
1 (Type/Class)	Epidemic.Utility
2 (Data Constructor)	Epidemic.Utility
nullPeople	Epidemic.Types.Population
numPeople	Epidemic.Types.Population
Observation
1 (Type/Class)	Epidemic.Types.Observations
2 (Data Constructor)	Epidemic.Types.Observations
observedEvents	Epidemic.Types.Observations
paramsBirthRate	Epidemic.Model.LogisticBDSD
paramsCapacity	Epidemic.Model.LogisticBDSD
paramsDeathRate	Epidemic.Model.LogisticBDSD
paramsDisasters	Epidemic.Model.LogisticBDSD
paramsSamplingRate	Epidemic.Model.LogisticBDSD
People
1 (Type/Class)	Epidemic.Types.Population
2 (Data Constructor)	Epidemic.Types.Population
peopleInEvents	Epidemic
Person
1 (Type/Class)	Epidemic.Types.Population
2 (Data Constructor)	Epidemic.Types.Population
personByteString	Epidemic.Types.Population
personsInEvent	Epidemic
PointProcessEvents
1 (Type/Class)	Epidemic.Types.Observations
2 (Data Constructor)	Epidemic.Types.Observations
pointProcessEvents	Epidemic.Types.Observations
popSampPeople	Epidemic.Types.Events
popSampSeq	Epidemic.Types.Events
popSampTime	Epidemic.Types.Events
Population	Epidemic.Types.Population
PopulationSample	Epidemic.Types.Events
Probability	Epidemic.Types.Parameter
randInhomExp	Epidemic.Utility
randomEvent
1 (Function)	Epidemic.Model.LogisticBDSD
2 (Function)	Epidemic.Model.InhomogeneousBDS
3 (Function)	Epidemic.Model.BDSCOD
randomPerson	Epidemic.Utility
Rate	Epidemic.Types.Parameter
RBranch	Epidemic.Types.Observations
ReconstructedTree	Epidemic.Types.Observations
reconstructedTreeEvents	Epidemic.Types.Observations
Removal	Epidemic.Types.Events
removedPeople	Epidemic.Types.Population
removePerson	Epidemic.Types.Population
rightBraceBuilder	Epidemic.Types.Newick
RLeaf	Epidemic.Types.Observations
rNaught	Epidemic.Types.Parameter
scNewIdentifier	Epidemic.Types.Simulation
scPopulation	Epidemic.Types.Simulation
scRates	Epidemic.Types.Simulation
scRequireCherry	Epidemic.Types.Simulation
scSimDuration	Epidemic.Types.Simulation
scStartTime	Epidemic.Types.Simulation
scValidPopulation	Epidemic.Types.Simulation
selectElem	Epidemic.Utility
Shoot	Epidemic.Types.Events
simulation	Epidemic.Utility
simulation'	Epidemic.Utility
SimulationConfiguration
1 (Type/Class)	Epidemic.Types.Simulation
2 (Data Constructor)	Epidemic.Types.Simulation
SimulationRandEvent
1 (Type/Class)	Epidemic.Types.Simulation
2 (Data Constructor)	Epidemic.Types.Simulation
SimulationState
1 (Type/Class)	Epidemic.Types.Simulation
2 (Data Constructor)	Epidemic.Types.Simulation
simulationWithGenIO	Epidemic.Utility
simulationWithSystemRandom	Epidemic.Utility
sort	Epidemic.Utility
StoppingTime	Epidemic.Types.Events
susceptiblePeople	Epidemic.Types.Population
TerminatedSimulation	Epidemic.Types.Simulation
timeAfterDelta	Epidemic.Types.Time
Timed
1 (Type/Class)	Epidemic.Types.Time
2 (Data Constructor)	Epidemic.Types.Time
TimeDelta
1 (Type/Class)	Epidemic.Types.Time
2 (Data Constructor)	Epidemic.Types.Time
timeDelta	Epidemic.Types.Time