epi-sim-0.2.2.0: A library for simulating epidemics as birth-death processes.

Index

addPersonEpidemic.Types.Population
allEvents 
1 (Function)Epidemic.InhomogeneousBDS
2 (Function)Epidemic.InhomogeneousBD
3 (Function)Epidemic.BirthDeathSamplingOccurrence
4 (Function)Epidemic.BirthDeathSamplingCatastropheOccurrence
5 (Function)Epidemic.BirthDeathSampling
6 (Function)Epidemic.BirthDeath
7 (Function)Epidemic.BDSCOD
asNewickStringEpidemic.Types.Events
asPeopleEpidemic.Types.Population
asTimedEpidemic.Types.Parameter
birthProbEpidemic
BranchEpidemic.Types.Events
cadlagValueEpidemic.Types.Parameter
cadlagValue'Epidemic.Types.Parameter
CatastropheEpidemic.Types.Events
configuration 
1 (Function)Epidemic.InhomogeneousBDS
2 (Function)Epidemic.InhomogeneousBD
3 (Function)Epidemic.BirthDeathSamplingOccurrence
4 (Function)Epidemic.BirthDeathSamplingCatastropheOccurrence
5 (Function)Epidemic.BirthDeathSampling
6 (Function)Epidemic.BirthDeath
7 (Function)Epidemic.BDSCOD
count'Epidemic.Utility
derivedFromEpidemic.Types.Events
diracDeltaValueEpidemic.Types.Parameter
diracDeltaValue'Epidemic.Types.Parameter
DisasterEpidemic.Types.Events
EpidemicEventEpidemic.Types.Events
EpidemicTreeEpidemic.Types.Events
eventPopDeltaEpidemic
eventRateEpidemic
eventTimeEpidemic.Types.Events
finalSizeEpidemic.Utility
firstScheduledEpidemic
hasDescendentWhichEpidemic
hasSampledDescendentEpidemic
hasSampledLeafEpidemic
hasTimeEpidemic.Types.Parameter
hasTime'Epidemic.Types.Parameter
haveCommonPeopleEpidemic.Types.Population
includesPersonEpidemic.Types.Population
infectedEpidemic
infectedByEpidemic
InfectionEpidemic.Types.Events
infectiousPeopleEpidemic
inhomBDSRatesEpidemic.InhomogeneousBDS
inhomExponentialEpidemic.Utility
initialIdentifierEpidemic.Utility
isAscendingEpidemic.Types.Parameter
isInfectedEpidemic
isNonReconTreeObservationEpidemic.Utility
isReconTreeLeafEpidemic.Utility
LeafEpidemic.Types.Events
maybeEpidemicTreeEpidemic.Types.Events
maybeReconstructedTreeEpidemic.Types.Events
ModelParametersEpidemic
NBranch 
1 (Type/Class)Epidemic.Utility
2 (Data Constructor)Epidemic.Utility
NBranchSet 
1 (Type/Class)Epidemic.Utility
2 (Data Constructor)Epidemic.Utility
NewickEpidemic.Types.Events
newickBranchEpidemic.Utility
newickBranchSetEpidemic.Utility
newickInternalEpidemic.Utility
newickLeafEpidemic.Utility
newickLengthEpidemic.Utility
newickNameEpidemic.Utility
newickSubtreeEpidemic.Utility
newickTreeEpidemic.Utility
newIdentifierEpidemic.Utility
newPersonEpidemic.Utility
nextTimeEpidemic.Types.Parameter
nextTime'Epidemic.Types.Parameter
NInternalEpidemic.Utility
NLeafEpidemic.Utility
NLengthEpidemic.Utility
NNameEpidemic.Utility
noScheduledEventEpidemic
NSubtreeEpidemic.Utility
NTree 
1 (Type/Class)Epidemic.Utility
2 (Data Constructor)Epidemic.Utility
nullPeopleEpidemic.Types.Population
numPeopleEpidemic.Types.Population
observedEvents 
1 (Function)Epidemic.InhomogeneousBDS
2 (Function)Epidemic.BirthDeathSamplingOccurrence
3 (Function)Epidemic.BirthDeathSamplingCatastropheOccurrence
4 (Function)Epidemic.BDSCOD
OccurrenceEpidemic.Types.Events
People 
1 (Type/Class)Epidemic.Types.Population
2 (Data Constructor)Epidemic.Types.Population
peopleInEventsEpidemic
Person 
1 (Type/Class)Epidemic.Types.Population
2 (Data Constructor)Epidemic.Types.Population
personByteStringEpidemic.Types.Population
personsInEventEpidemic
PointProcessEvents 
1 (Type/Class)Epidemic.Types.Events
2 (Data Constructor)Epidemic.Types.Events
pointProcessEventsEpidemic.Types.Events
PopulationEpidemic
populationEpidemic.Utility
ProbabilityEpidemic.Types.Parameter
randInhomExpEpidemic.Utility
randomPersonEpidemic.Utility
RateEpidemic.Types.Parameter
ratesEpidemic.Utility
RBranchEpidemic.Types.Events
ReconstructedTreeEpidemic.Types.Events
RemovalEpidemic.Types.Events
removedPeopleEpidemic
removePersonEpidemic.Types.Population
RLeafEpidemic.Types.Events
rNaughtEpidemic
SampleTreeEpidemic
sampleTreeEpidemic
sampleTreeEventsEpidemic
sampleTreeEvents'Epidemic
SamplingEpidemic.Types.Events
samplingEventEpidemic
selectElemEpidemic.Utility
ShootEpidemic.Types.Events
simulationEpidemic.Utility
simulation'Epidemic.Utility
SimulationConfiguration 
1 (Type/Class)Epidemic.Utility
2 (Data Constructor)Epidemic.Utility
simulationWithSystemRandomEpidemic.Utility
sortEpidemic.Utility
STBirthEpidemic
STDeathEpidemic
susceptiblePeopleEpidemic
TimeEpidemic.Types.Parameter
Timed 
1 (Type/Class)Epidemic.Types.Parameter
2 (Data Constructor)Epidemic.Types.Parameter
timeLimitEpidemic.Utility
TransmissionTreeEpidemic
transmissionTreeEpidemic
TTBirthEpidemic
TTDeathEpidemic
TTUnresolvedEpidemic
wasSampledEpidemic