Copyright	(c) Dominik Schrempf 2021
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

ELynx.Tree.Distribution.BirthDeath

Description

Creation date: Tue Feb 13 13:16:18 2018.

See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005.

Distribution of the values of the point process such that it corresponds to reconstructed trees under the birth and death process.

Synopsis

data BirthDeathDistribution = BDD {
- bddTOr :: Time
- bddLa :: Rate
- bddMu :: Rate
}
cumulative :: BirthDeathDistribution -> Time -> Double
density :: BirthDeathDistribution -> Time -> Double
quantile :: BirthDeathDistribution -> Double -> Time

Documentation

data BirthDeathDistribution Source #

Distribution of the values of the point process such that it corresponds to a reconstructed tree of the birth and death process.

Constructors

BDD
Fields bddTOr :: Time Time to origin of the tree. bddLa :: Rate Birth rate. bddMu :: Rate Death rate.

Instances

Instances details

Eq BirthDeathDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeath Methods (==) :: BirthDeathDistribution -> BirthDeathDistribution -> Bool # (/=) :: BirthDeathDistribution -> BirthDeathDistribution -> Bool #
Data BirthDeathDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeath Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BirthDeathDistribution -> c BirthDeathDistribution # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BirthDeathDistribution # toConstr :: BirthDeathDistribution -> Constr # dataTypeOf :: BirthDeathDistribution -> DataType # dataCast1 :: Typeable t => (forall d. Data d => c (t d)) -> Maybe (c BirthDeathDistribution) # dataCast2 :: Typeable t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BirthDeathDistribution) # gmapT :: (forall b. Data b => b -> b) -> BirthDeathDistribution -> BirthDeathDistribution # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathDistribution -> r # gmapQr :: forall r r'. (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathDistribution -> r # gmapQ :: (forall d. Data d => d -> u) -> BirthDeathDistribution -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> BirthDeathDistribution -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathDistribution -> m BirthDeathDistribution #
Generic BirthDeathDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeath Associated Types type Rep BirthDeathDistribution :: Type -> Type # Methods from :: BirthDeathDistribution -> Rep BirthDeathDistribution x # to :: Rep BirthDeathDistribution x -> BirthDeathDistribution #
Distribution BirthDeathDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeath Methods cumulative :: BirthDeathDistribution -> Double -> Double # complCumulative :: BirthDeathDistribution -> Double -> Double #
ContDistr BirthDeathDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeath Methods density :: BirthDeathDistribution -> Double -> Double # quantile :: BirthDeathDistribution -> Double -> Double # complQuantile :: BirthDeathDistribution -> Double -> Double # logDensity :: BirthDeathDistribution -> Double -> Double #
ContGen BirthDeathDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeath Methods genContVar :: PrimMonad m => BirthDeathDistribution -> Gen (PrimState m) -> m Double #
type Rep BirthDeathDistribution Source #
Instance details Defined in ELynx.Tree.Distribution.BirthDeath type Rep BirthDeathDistribution = D1 ('MetaData "BirthDeathDistribution" "ELynx.Tree.Distribution.BirthDeath" "elynx-tree-0.6.0.0-FQkEU9t6m33732ommPyIXg" 'False) (C1 ('MetaCons "BDD" 'PrefixI 'True) (S1 ('MetaSel ('Just "bddTOr") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Time) :: (S1 ('MetaSel ('Just "bddLa") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate) :: S1 ('MetaSel ('Just "bddMu") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate))))

cumulative :: BirthDeathDistribution -> Time -> Double Source #

Cumulative distribution function Eq. (3).

density :: BirthDeathDistribution -> Time -> Double Source #

Density function Eq. (2).

quantile :: BirthDeathDistribution -> Double -> Time Source #

Inverted cumulative probability distribution cumulative. See also ContDistr.