Copyright	(c) Dominik Schrempf 2020
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

ELynx.Data.Tree.Supported

Description

Creation date: Thu Jun 13 14:06:45 2019.

Non-negativity of branch support values is not (yet) ensured. To ensure non-negativity, a newtype wrapper could be used, but this would be a major refactor.

Synopsis

type BranchSupport = Double
class Supported e where
- getSup :: e -> BranchSupport
- setSup :: BranchSupport -> e -> e
normalizeBranchSupport :: Supported e => Tree e a -> Tree e a
collapse :: (Eq e, Eq a, Supported e) => BranchSupport -> Tree e a -> Tree e a

Documentation

type BranchSupport = Double Source #

Branch support.

class Supported e where Source #

A branch label that supports extraction and setting of branch support values.

Methods

getSup :: e -> BranchSupport Source #

setSup :: BranchSupport -> e -> e Source #

Instances

Supported PhyloExplicit Source #
Instance details Defined in ELynx.Data.Tree.Phylogeny Methods getSup :: PhyloExplicit -> BranchSupport Source # setSup :: BranchSupport -> PhyloExplicit -> PhyloExplicit Source #
Supported Support Source #
Instance details Defined in ELynx.Data.Tree.Phylogeny Methods getSup :: Support -> BranchSupport Source # setSup :: BranchSupport -> Support -> Support Source #

normalizeBranchSupport :: Supported e => Tree e a -> Tree e a Source #

Normalize branch support values. The maximum branch support value will be set to 1.0.

collapse :: (Eq e, Eq a, Supported e) => BranchSupport -> Tree e a -> Tree e a Source #

Collapse branches with support lower than given value.

The branch and node labels of the collapsed branches are discarded.