Copyright	(c) Dominik Schrempf 2021
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

ELynx.Data.Character.AminoAcidX

Description

Creation date: Thu Oct 4 18:26:35 2018.

See header of Alphabet.

Extended amino acid with gaps. See also https://www.bioinformatics.org/sms/iupac.html or https://en.wikipedia.org/wiki/International_Union_of_Pure_and_Applied_Chemistry.

Amino Acid Code:  Three letter Code:  Amino Acid:
----------------  ------------------  -----------
A                 Ala                 Alanine
C                 Cys                 Cysteine
D                 Asp                 Aspartic Acid
E                 Glu                 Glutamic Acid
F                 Phe                 Phenylalanine
G                 Gly                 Glycine
H                 His                 Histidine
I                 Ile                 Isoleucine
K                 Lys                 Lysine
L                 Leu                 Leucine
M                 Met                 Methionine
N                 Asn                 Asparagine
P                 Pro                 Proline
Q                 Gln                 Glutamine
R                 Arg                 Arginine
S                 Ser                 Serine
T                 Thr                 Threonine
V                 Val                 Valine
W                 Trp                 Tryptophan
Y                 Tyr                 Tyrosine
----------------  ------------------  -----------
-                 Gap                 No amino acid
.                 Gap                 No amino acid

Synopsis

data AminoAcidX
- = A
- | C
- | D
- | E
- | F
- | G
- | H
- | I
- | K
- | L
- | M
- | N
- | P
- | Q
- | R
- | S
- | T
- | V
- | W
- | Y
- | Gap

Documentation

data AminoAcidX Source #

Amino acids.

Constructors

A
C
D
E
F
G
H
I
K
L
M
N
P
Q
R
S
T
V
W
Y
Gap

Instances

Instances details

Bounded AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods minBound :: AminoAcidX # maxBound :: AminoAcidX #
Enum AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods succ :: AminoAcidX -> AminoAcidX # pred :: AminoAcidX -> AminoAcidX # toEnum :: Int -> AminoAcidX # fromEnum :: AminoAcidX -> Int # enumFrom :: AminoAcidX -> [AminoAcidX] # enumFromThen :: AminoAcidX -> AminoAcidX -> [AminoAcidX] # enumFromTo :: AminoAcidX -> AminoAcidX -> [AminoAcidX] # enumFromThenTo :: AminoAcidX -> AminoAcidX -> AminoAcidX -> [AminoAcidX] #
Eq AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods (==) :: AminoAcidX -> AminoAcidX -> Bool # (/=) :: AminoAcidX -> AminoAcidX -> Bool #
Ord AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods compare :: AminoAcidX -> AminoAcidX -> Ordering # (<) :: AminoAcidX -> AminoAcidX -> Bool # (<=) :: AminoAcidX -> AminoAcidX -> Bool # (>) :: AminoAcidX -> AminoAcidX -> Bool # (>=) :: AminoAcidX -> AminoAcidX -> Bool # max :: AminoAcidX -> AminoAcidX -> AminoAcidX # min :: AminoAcidX -> AminoAcidX -> AminoAcidX #
Read AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods readsPrec :: Int -> ReadS AminoAcidX # readList :: ReadS [AminoAcidX] # readPrec :: ReadPrec AminoAcidX # readListPrec :: ReadPrec [AminoAcidX] #
Show AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods showsPrec :: Int -> AminoAcidX -> ShowS # show :: AminoAcidX -> String # showList :: [AminoAcidX] -> ShowS #
Unbox AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX
CharacterX AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods gap :: AminoAcidX Source #
Character AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods toWord :: AminoAcidX -> Word8 Source # fromWord :: Word8 -> AminoAcidX Source #
Vector Vector AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) AminoAcidX -> m (Vector AminoAcidX) # basicUnsafeThaw :: PrimMonad m => Vector AminoAcidX -> m (Mutable Vector (PrimState m) AminoAcidX) # basicLength :: Vector AminoAcidX -> Int # basicUnsafeSlice :: Int -> Int -> Vector AminoAcidX -> Vector AminoAcidX # basicUnsafeIndexM :: Monad m => Vector AminoAcidX -> Int -> m AminoAcidX # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) AminoAcidX -> Vector AminoAcidX -> m () # elemseq :: Vector AminoAcidX -> AminoAcidX -> b -> b #
MVector MVector AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX Methods basicLength :: MVector s AminoAcidX -> Int # basicUnsafeSlice :: Int -> Int -> MVector s AminoAcidX -> MVector s AminoAcidX # basicOverlaps :: MVector s AminoAcidX -> MVector s AminoAcidX -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) AminoAcidX) # basicInitialize :: PrimMonad m => MVector (PrimState m) AminoAcidX -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> AminoAcidX -> m (MVector (PrimState m) AminoAcidX) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) AminoAcidX -> Int -> m AminoAcidX # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) AminoAcidX -> Int -> AminoAcidX -> m () # basicClear :: PrimMonad m => MVector (PrimState m) AminoAcidX -> m () # basicSet :: PrimMonad m => MVector (PrimState m) AminoAcidX -> AminoAcidX -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) AminoAcidX -> MVector (PrimState m) AminoAcidX -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) AminoAcidX -> MVector (PrimState m) AminoAcidX -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) AminoAcidX -> Int -> m (MVector (PrimState m) AminoAcidX) #
newtype Vector AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX newtype Vector AminoAcidX = V_AminoAcidX (Vector Word8)
newtype MVector s AminoAcidX Source #
Instance details Defined in ELynx.Data.Character.AminoAcidX newtype MVector s AminoAcidX = MV_AminoAcidX (MVector s Word8)