diversity-0.4.0.1: Return the diversity at each position for all sequences in a fasta file

Safe HaskellSafe-Inferred
LanguageHaskell98

Math.Diversity.Types

Description

Collects all application specific types.

Synopsis

Documentation

type Fragment = Seq Char Source

type Sample = String Source

type Position = Int Source

type Diversity = Double Source

type Order = Double Source

type Label = String Source

type Window = Int Source

type PositionMap = Map Position [(Sample, Fragment)] Source

At each position we have a collection of fragments to find the diversity of

type DiversityMap = Map Position Diversity Source

At each position we have a diversity