cobot-io-0.1.2.0: Biological data file formats and IO
Bio.Sequence.Basecalled.Type
newtype BasecalledSequence Source #
Constructors
Defined in Bio.Sequence.Basecalled.Type
Methods
(==) :: BasecalledSequence -> BasecalledSequence -> Bool #
(/=) :: BasecalledSequence -> BasecalledSequence -> Bool #
showsPrec :: Int -> BasecalledSequence -> ShowS #
show :: BasecalledSequence -> String #
showList :: [BasecalledSequence] -> ShowS #
Associated Types
type Element BasecalledSequence :: Type Source #
type Marking BasecalledSequence :: Type Source #
type Weight BasecalledSequence :: Type Source #
toSequence :: BasecalledSequence -> Sequence (Marking BasecalledSequence) (Weight BasecalledSequence) (Element BasecalledSequence) Source #
fromSequence :: Sequence (Marking BasecalledSequence) (Weight BasecalledSequence) (Element BasecalledSequence) -> BasecalledSequence Source #
Defined in Bio.ABI.Clean
clean :: BasecalledSequence -> Maybe BasecalledSequence Source #
cleanWith :: Thresholds -> BasecalledSequence -> Maybe BasecalledSequence Source #
Converts ByteString (that should be content of ABI file) into BasecalledSequence.
ByteString
BasecalledSequence
Defined in Bio.ABI.Decode
sequenceDecode :: ByteString -> Either Text BasecalledSequence Source #