score | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
scoreMatrix | Bio.Chain.Alignment.Type |
Scoring | Bio.Chain.Alignment.Type |
scoring | Bio.Chain.Alignment.Scoring.Loader, Bio.Chain.Alignment.Scoring |
ScoringMatrix | Bio.Chain.Alignment.Scoring.Loader, Bio.Chain.Alignment.Scoring |
SD | Bio.Utils.IUPAC |
sd | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
semi | Bio.Chain.Alignment.Type |
SemiglobalAlignment | |
1 (Type/Class) | Bio.Chain.Alignment.Algorithms, Bio.Chain.Alignment |
2 (Data Constructor) | Bio.Chain.Alignment.Algorithms, Bio.Chain.Alignment |
semiStart | Bio.Chain.Alignment.Algorithms |
sequence1 | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
sequence2 | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
SequenceAlignment | Bio.Chain.Alignment.Type |
SER | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
Serine | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
set | Bio.Molecule |
SG | Bio.Utils.IUPAC |
sg | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
similarity | Bio.Chain.Alignment |
similarity' | Bio.Chain.Alignment |
similarityGen | Bio.Chain.Alignment |
similarityGen' | Bio.Chain.Alignment |
SimpleGap | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
SimpleGap2 | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
singleton | Bio.Molecule |
Stop | Bio.Chain.Alignment.Type |
substitute | Bio.Chain.Alignment.Algorithms |
substituteED | Bio.Chain.Alignment.Algorithms |
Substitution | Bio.Chain.Alignment.Scoring.TH |
svd3 | Bio.Utils.Geometry |
Symbol | Bio.Utils.Monomer, Bio.Protein.AminoAcid, Bio.NucleicAcid.Nucleotide |
symbol | Bio.Utils.Monomer, Bio.Protein.AminoAcid, Bio.NucleicAcid.Nucleotide |